RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 MANBALQ9NQG1 85 aa12.92□□□□□ -0.34
USP39-209ENST00000458268 LOC100131303A0A0U1RQF7 123 aa12.91□□□□□ -0.34
USP39-209ENST00000458268 LTAP01374 205 aa12.91□□□□□ -0.34
USP39-209ENST00000458268 MRPS16Q9Y3D3 137 aaKnown RBP12.91□□□□□ -0.34
USP39-209ENST00000458268 NKX2-5P52952 324 aaPredicted RBP12.9□□□□□ -0.34
USP39-209ENST00000458268 LINC00336Q6ZUF6 198 aa12.9□□□□□ -0.34
USP39-209ENST00000458268 BAGE2Q86Y30 109 aa12.9□□□□□ -0.34
USP39-209ENST00000458268 DNAH10Q8IVF4 4471 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 KRBOX1C9JBD0 128 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 K7EQD1 137 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 IFNA1P01562 189 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 CFAP126Q5VTH2 177 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 NEGR1Q7Z3B1 354 aa12.89□□□□□ -0.35
USP39-209ENST00000458268 FRAS1Q86XX4 4008 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 TRBV6-1A0A0K0K1D8 114 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 RS1O15537 224 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 NXPH4O95158 308 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 S100A9P06702 114 aaKnown RBP12.88□□□□□ -0.35
USP39-209ENST00000458268 ALKAL2Q6UX46 152 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 DERL1Q9BUN8 251 aa12.88□□□□□ -0.35
USP39-209ENST00000458268 ARMS2P0C7Q2 107 aa12.87□□□□□ -0.35
USP39-209ENST00000458268 GATA1P15976 413 aaPredicted RBP12.87□□□□□ -0.35
USP39-209ENST00000458268 RPL35P42766 123 aaKnown RBP12.87□□□□□ -0.35
USP39-209ENST00000458268 RPL19P84098 196 aaKnown RBP12.87□□□□□ -0.35
USP39-209ENST00000458268 ZNF674Q2M3X9 581 aa12.87□□□□□ -0.35
USP39-209ENST00000458268 JPT2Q9H910 190 aa12.87□□□□□ -0.35
USP39-209ENST00000458268 TRAV1-1A0A0B4J248 108 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 M0R381 172 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 MGST1P10620 155 aaKnown RBP12.86□□□□□ -0.35
USP39-209ENST00000458268 TTC32Q5I0X7 151 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 LYPD5Q6UWN5 251 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 C6orf223Q8N319 242 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 SYT8Q8NBV8 401 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 TXNDC17Q9BRA2 123 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 UPK3BQ9BT76 320 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 PHLDA3Q9Y5J5 127 aa12.86□□□□□ -0.35
USP39-209ENST00000458268 SIVA1O15304 175 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 FAM74A4Q5TZK3 123 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 PRADC1Q9BSG0 188 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 KRTAP1-5Q9BYS1 174 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 IL36BQ9NZH7 164 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 BIRC6Q9NR09 4857 aa12.85□□□□□ -0.35
USP39-209ENST00000458268 SSTP61278 116 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 LINC01559Q495D7 138 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 CENPWQ5EE01 88 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 COX8CQ7Z4L0 72 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 SLC25A29Q8N8R3 303 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 PARLQ9H300 379 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 MED9Q9NWA0 146 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 BOLA1Q9Y3E2 137 aa12.84□□□□□ -0.35
USP39-209ENST00000458268 A8MWV9 139 aa12.83□□□□□ -0.36
USP39-209ENST00000458268 BCL2P10415 239 aa12.83□□□□□ -0.36
USP39-209ENST00000458268 MEF2BQ02080 365 aaPredicted RBP12.83□□□□□ -0.36
USP39-209ENST00000458268 RHOHQ15669 191 aa12.83□□□□□ -0.36
USP39-209ENST00000458268 DMRTA1Q5VZB9 504 aa12.83□□□□□ -0.36
USP39-209ENST00000458268 MUC21A0A0G2JKD1 596 aa12.82□□□□□ -0.36
USP39-209ENST00000458268 MUC21A0A140T8X8 626 aa12.82□□□□□ -0.36
USP39-209ENST00000458268 RAB19A4D1S5 217 aa12.82□□□□□ -0.36
USP39-209ENST00000458268 C11orf52Q96A22 123 aa12.82□□□□□ -0.36
USP39-209ENST00000458268 SAMD10Q9BYL1 202 aa12.82□□□□□ -0.36
USP39-209ENST00000458268 A0A087WWL8 130 aa12.81□□□□□ -0.36
USP39-209ENST00000458268 GNG4P50150 75 aa12.81□□□□□ -0.36
USP39-209ENST00000458268 WFDC10BQ8IUB3 73 aa12.81□□□□□ -0.36
USP39-209ENST00000458268 PTH2Q96A98 100 aa12.81□□□□□ -0.36
USP39-209ENST00000458268 GAGE12JA6NER3 117 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 PDE6DO43924 150 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 CIDEAO60543 219 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 GAGE1Q13065 139 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 GAGE4Q13068 117 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 GAGE5Q13069 117 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 GAGE13Q4V321 117 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 Q6ZSN1 163 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 MLST8Q9BVC4 326 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 VAX2Q9UIW0 290 aa12.8□□□□□ -0.36
USP39-209ENST00000458268 TRBV6-4A0A1B0GX49 114 aa12.79□□□□□ -0.36
USP39-209ENST00000458268 TNP2Q05952 138 aa12.79□□□□□ -0.36
USP39-209ENST00000458268 DNLZQ5SXM8 178 aa12.79□□□□□ -0.36
USP39-209ENST00000458268 ZFP82Q8N141 532 aa12.79□□□□□ -0.36
USP39-209ENST00000458268 DAZAP1Q96EP5 407 aaKnown RBP12.79□□□□□ -0.36
USP39-209ENST00000458268 TPPP3Q9BW30 176 aa12.79□□□□□ -0.36
USP39-209ENST00000458268 A0A1B0GVY2 172 aa12.78□□□□□ -0.36
USP39-209ENST00000458268 CEBPGP53567 150 aa12.78□□□□□ -0.36
USP39-209ENST00000458268 BLOC1S1P78537 153 aa12.78□□□□□ -0.36
USP39-209ENST00000458268 LY96Q9Y6Y9 160 aa12.78□□□□□ -0.36
USP39-209ENST00000458268 GZMBP10144 247 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 LINC00315P59091 139 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 OR10J3Q5JRS4 329 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 ZFP2Q6ZN57 461 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 SH2D6Q7Z4S9 175 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 C14orf178Q8N769 122 aaPredicted RBP12.77□□□□□ -0.37
USP39-209ENST00000458268 OR10AG1Q8NH19 301 aa12.77□□□□□ -0.37
USP39-209ENST00000458268 A0A1W2PPQ1 181 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 RHODO00212 210 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 SPANXN1Q5VSR9 72 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 OR2D3Q8NGH3 330 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 ATP6V0E2Q8NHE4 81 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 SFRP2Q96HF1 295 aa12.76□□□□□ -0.37
USP39-209ENST00000458268 DNAH2Q9P225 4427 aa12.75□□□□□ -0.37
USP39-209ENST00000458268 ZNF56Q15929 161 aa12.75□□□□□ -0.37
USP39-209ENST00000458268 PIK3CD-AS1Q5SR53 167 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms