RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ZNF256Q9Y2P7 627 aaPredicted RBP9.15□□□□□ -0.95
SMPD4-213ENST00000454468 TRAV8-2A0A0B4J237 113 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 KRTAP10-9P60411 292 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 CSMD2Q7Z408 3487 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 TRAV21A0A0B4J279 112 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 H3BUT2 72 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 SPINK13Q1W4C9 94 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 PRR9Q5T870 116 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 OR2K2Q8NGT1 345 aa9.14□□□□□ -0.95
SMPD4-213ENST00000454468 K7EMI3 77 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 HOXA3O43365 443 aaPredicted RBP9.13□□□□□ -0.95
SMPD4-213ENST00000454468 CTRLP40313 264 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 LINC01356Q8N9X3 169 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 MRPS16Q9Y3D3 137 aaKnown RBP9.13□□□□□ -0.95
SMPD4-213ENST00000454468 ZNF56Q15929 161 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 ST20Q9HBF5 79 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 NDUFA4O00483 81 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 C12orf54Q6X4T0 127 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 USMG5Q96IX5 58 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 JPT2Q9H910 190 aa9.13□□□□□ -0.95
SMPD4-213ENST00000454468 RPL39LQ96EH5 51 aaKnown RBP9.12□□□□□ -0.95
SMPD4-213ENST00000454468 Q96MF0 132 aa9.12□□□□□ -0.95
SMPD4-213ENST00000454468 BBC3Q96PG8 261 aaPredicted RBP9.12□□□□□ -0.95
SMPD4-213ENST00000454468 ITPR3Q14573 2671 aa9.12□□□□□ -0.95
SMPD4-213ENST00000454468 PCP2Q8IVA1 136 aa9.12□□□□□ -0.95
SMPD4-213ENST00000454468 IGHG2P01859 326 aa9.12□□□□□ -0.95
SMPD4-213ENST00000454468 SNRPD3P62318 126 aaKnown RBP9.12□□□□□ -0.95
SMPD4-213ENST00000454468 SCGB3A1Q96QR1 104 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 SS18L2Q9UHA2 77 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 IGHV7-4-1A0A0J9YVY3 117 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 TAX1BP3O14907 124 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 A6NDX4 124 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 J3QR89 54 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 OVOL1O14753 267 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 ZC2HC1BQ5TFG8 222 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 DYNLRB2Q8TF09 96 aa9.11□□□□□ -0.95
SMPD4-213ENST00000454468 NXT2Q9NPJ8 142 aaKnown RBP9.11□□□□□ -0.95
SMPD4-213ENST00000454468 HELZ2Q9BYK8 2649 aaKnown RBP9.1□□□□□ -0.95
SMPD4-213ENST00000454468 CHD6Q8TD26 2715 aa9.1□□□□□ -0.95
SMPD4-213ENST00000454468 KNCNA6PVL3 124 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 IGLC6P0CF74 106 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 NF1P21359 2839 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 SMPXQ9UHP9 88 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 SFTA2Q6UW10 78 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 TMEM190Q8WZ59 177 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 TSSC4Q9Y5U2 329 aaPredicted RBP9.09□□□□□ -0.95
SMPD4-213ENST00000454468 LAGE3Q14657 143 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 JMJD8Q96S16 334 aa9.09□□□□□ -0.95
SMPD4-213ENST00000454468 TRBV6-1A0A0K0K1D8 114 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 TMEM8BA6NDV4 472 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 PRM2P04554 102 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 LINC01559Q495D7 138 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 GEMIN7Q9H840 131 aaKnown RBP9.08□□□□□ -0.96
SMPD4-213ENST00000454468 SPCS1Q9Y6A9 102 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 SLURP1P55000 103 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.08□□□□□ -0.96
SMPD4-213ENST00000454468 TMEM97Q5BJF2 176 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 SCGB1D4Q6XE38 83 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 MRPL35Q9NZE8 188 aaKnown RBP9.08□□□□□ -0.96
SMPD4-213ENST00000454468 VPS13CQ709C8 3753 aa9.08□□□□□ -0.96
SMPD4-213ENST00000454468 SLC25A16P16260 332 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 SRSF1Q07955 248 aaKnown RBP eCLIP9.07□□□□□ -0.96
SMPD4-213ENST00000454468 RNF185Q96GF1 192 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 MS4A6AQ9H2W1 248 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 FBN2P35556 2912 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 DEFB131AP59861 70 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 LINC01545Q5VT33 79 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 ZNF493Q6ZR52 646 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 C18orf65Q6ZTR6 163 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 FLNBO75369 2602 aaKnown RBP9.07□□□□□ -0.96
SMPD4-213ENST00000454468 IGHV4OR15-8A0A075B7B6 117 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 A0A087WW49 117 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 IGKCP01834 107 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 BVES-AS1Q5T3Y7 98 aa9.07□□□□□ -0.96
SMPD4-213ENST00000454468 G3V4G9 280 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 HSD52Q0P140 79 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 TCTEX1D4Q5JR98 221 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 C9orf47Q6ZRZ4 202 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 IGHV3-64A0A075B6Q5 118 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 HOXD3P31249 432 aaPredicted RBP9.06□□□□□ -0.96
SMPD4-213ENST00000454468 DPH3P1Q9H4G8 78 aa9.06□□□□□ -0.96
SMPD4-213ENST00000454468 CD300EQ496F6 205 aaPredicted RBP9.06□□□□□ -0.96
SMPD4-213ENST00000454468 A0A096LNJ9 63 aa9.05□□□□□ -0.96
SMPD4-213ENST00000454468 DPM2O94777 84 aa9.05□□□□□ -0.96
SMPD4-213ENST00000454468 KLHL30-AS1Q8NEE0 82 aa9.05□□□□□ -0.96
SMPD4-213ENST00000454468 OR11H1Q8NG94 326 aa9.05□□□□□ -0.96
SMPD4-213ENST00000454468 RBAKDNA6NC62 111 aa9.05□□□□□ -0.96
SMPD4-213ENST00000454468 SUMO2P61956 95 aaKnown RBP9.05□□□□□ -0.96
SMPD4-213ENST00000454468 COX8AP10176 69 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 TMEM170BQ5T4T1 132 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 ZFAND2AQ8N6M9 145 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 SCRT2Q9NQ03 307 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 TEX48A0A1B0GUV7 120 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 ATP5LO75964 103 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 DSCR9P59020 149 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 Q8N8P6 123 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 HIST1H4GQ99525 98 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 CITED1Q99966 193 aa9.04□□□□□ -0.96
SMPD4-213ENST00000454468 NHP2Q9NX24 153 aaKnown RBP9.04□□□□□ -0.96
SMPD4-213ENST00000454468 A6NDN8 102 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 205.6 ms