RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 Q8N6K4 173 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 TP53TG1Q9Y2A0 90 aa5.68□□□□□ -1.5
SYNE1-213ENST00000448038 USP9YO00507 2555 aaPredicted RBP5.67□□□□□ -1.5
SYNE1-213ENST00000448038 APOMO95445 188 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 C9orf47Q6ZRZ4 202 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 ZMAT4Q9H898 229 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 TRBV25-1A0A075B6N4 114 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 A0A087X0K7 114 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 A0A0U1RRA0 63 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 AVPP01185 164 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 C2orf66Q6UXQ4 117 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 IGF2BP2-AS1Q96M15 143 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 NACAE9PAV3 2078 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 NPYP01303 97 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 PLNP26678 52 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 C10orf99Q6UWK7 81 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 NEGR1Q7Z3B1 354 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 C11orf68Q9H3H3 251 aaKnown RBP5.67□□□□□ -1.5
SYNE1-213ENST00000448038 PKD1L2Q7Z442 2459 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 PIFOQ8TCI5 191 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF503Q96F45 646 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 SRSF2Q01130 221 aaKnown RBP5.67□□□□□ -1.5
SYNE1-213ENST00000448038 DMRTA1Q5VZB9 504 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 NDUFA11Q86Y39 141 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 RNF152Q8N8N0 203 aa5.67□□□□□ -1.5
SYNE1-213ENST00000448038 FASNP49327 2511 aaKnown RBP5.66□□□□□ -1.5
SYNE1-213ENST00000448038 CKS1BP61024 79 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 MBD6Q96DN6 1003 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 KLF12Q9Y4X4 402 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 RAI1Q7Z5J4 1906 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-213ENST00000448038 LRRK2Q5S007 2527 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 TRAV2A0A0B4J234 112 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 hDV102S1A0JD36 115 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
SYNE1-213ENST00000448038 INSL3P51460 131 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 SS18Q15532 418 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 SMIM2Q9BVW6 85 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 SIGLEC8Q9NYZ4 499 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 POLR3KQ9Y2Y1 108 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-213ENST00000448038 LAMA3Q16787 3333 aa5.66□□□□□ -1.5
SYNE1-213ENST00000448038 PAX4O43316 350 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 TMEM243Q9BU79 118 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 A0A096LPF7 62 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 VWC2LB2RUY7 222 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 ZC2HC1BQ5TFG8 222 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 RASL10AQ92737 203 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 PLEKHB2Q96CS7 222 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF702PQ9H963 129 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 ABCA12Q86UK0 2595 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 EPG5Q9HCE0 2579 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 LINC00158P58513 81 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 ZNF493Q6ZR52 646 aa5.65□□□□□ -1.5
SYNE1-213ENST00000448038 JMJD1CQ15652 2540 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 PSMG3-AS1Q96PY0 264 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 LGALS9O00182 355 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 PSCAO43653 123 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 Q6ZS46 218 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 C16orf74Q96GX8 76 aa5.65□□□□□ -1.51
SYNE1-213ENST00000448038 TRBV7-9A0A0J9YWB2 115 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 A0A0J9YX75 114 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 GAGE6Q13070 117 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 RHOHQ15669 191 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 C6orf226Q5I0X4 101 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 C20orf78Q9BR46 151 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 DNAL4O96015 105 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 PYY3Q5JQD4 70 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 ADAMTSL5Q6ZMM2 481 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 Q8N1Y9 231 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 TMEM141Q96I45 108 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 MAP6D1Q9H9H5 199 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 A0A0J9YY99 117 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 PSMB8P28062 276 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 MSRB1Q9NZV6 116 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 SMR3AQ99954 134 aa5.64□□□□□ -1.51
SYNE1-213ENST00000448038 NHP2Q9NX24 153 aaKnown RBP5.64□□□□□ -1.51
SYNE1-213ENST00000448038 HLA-DRB4P13762 266 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 LINC01006Q8NI28 216 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 ZFAND3Q9H8U3 227 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 HLA-DRB4X5D2U9 266 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 IGHV1-24A0A0C4DH33 117 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 CIDEAO60543 219 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 HIST2H2BDQ6DRA6 164 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 NDUFAF3Q9BU61 184 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 TIMM21Q9BVV7 248 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 HILS1P60008 231 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 PAX2Q02962 417 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 KLF5Q13887 457 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-213ENST00000448038 PMVKQ15126 192 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 RBMY1BA6NDE4 496 aaKnown RBP5.63□□□□□ -1.51
SYNE1-213ENST00000448038 RBMY1EA6NEQ0 496 aaKnown RBP5.63□□□□□ -1.51
SYNE1-213ENST00000448038 RBMY1DP0C7P1 496 aaKnown RBP5.63□□□□□ -1.51
SYNE1-213ENST00000448038 RBMY1A1P0DJD3 496 aaKnown RBP5.63□□□□□ -1.51
SYNE1-213ENST00000448038 RBMY1CP0DJD4 496 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 DEFB135Q30KP9 77 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 DEFB114Q30KQ6 69 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 SORL1Q92673 2214 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 BRCA2P51587 3418 aa5.63□□□□□ -1.51
SYNE1-213ENST00000448038 CRLF1O75462 422 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 SPART-AS1P0CW21 52 aa5.62□□□□□ -1.51
SYNE1-213ENST00000448038 GATA1P15976 413 aaPredicted RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms