RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PTH2Q96A98 100 aa10.48□□□□□ -0.73
LIMS3-201ENST00000437679 MANBALQ9NQG1 85 aa10.48□□□□□ -0.73
LIMS3-201ENST00000437679 TRAV1-1A0A0B4J248 108 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 SCO2A0A1W2PP80 73 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 K7EQD1 137 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 M0R036 132 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 RS1O15537 224 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 SULT1A2P50226 295 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 ZNF506Q5JVG8 444 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 C6orf223Q8N319 242 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 GNG13Q9P2W3 67 aa10.47□□□□□ -0.73
LIMS3-201ENST00000437679 PGPEP1LA6NFU8 196 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 KRBOX1C9JBD0 128 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 GATA1P15976 413 aaPredicted RBP10.46□□□□□ -0.73
LIMS3-201ENST00000437679 ZNF674Q2M3X9 581 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 CFAP126Q5VTH2 177 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 LYPD5Q6UWN5 251 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 TXNDC17Q9BRA2 123 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 IL36BQ9NZH7 164 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 HECTD4Q9Y4D8 3996 aa10.46□□□□□ -0.73
LIMS3-201ENST00000437679 A0A1W2PPQ1 181 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 H3BVH4 76 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 SIVA1O15304 175 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 NXPH4O95158 308 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 CCL20P78556 96 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 PIK3CD-AS1Q5SR53 167 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 BAGE2Q86Y30 109 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 NHLRC2Q8NBF2 726 aa10.45□□□□□ -0.74
LIMS3-201ENST00000437679 IGHV3-73A0A0B4J1V6 119 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 A8MWV9 139 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 LINC01559Q495D7 138 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 DNLZQ5SXM8 178 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 SH2D6Q7Z4S9 175 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 SYT8Q8NBV8 401 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 PRADC1Q9BSG0 188 aa10.44□□□□□ -0.74
LIMS3-201ENST00000437679 TMSB15BA0A087X1C1 80 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 A0A1B0GVY2 172 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 TRBV6-4A0A1B0GX49 114 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 GRIFINA4D1Z8 144 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 IFNA1P01562 189 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 ARMS2P0C7Q2 107 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 RHOHQ15669 191 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 C9orf62Q8N4C0 152 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 SLC25A29Q8N8R3 303 aa10.43□□□□□ -0.74
LIMS3-201ENST00000437679 LOC100131303A0A0U1RQF7 123 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 MGST1P10620 155 aaKnown RBP10.42□□□□□ -0.74
LIMS3-201ENST00000437679 C11orf52Q96A22 123 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 MLST8Q9BVC4 326 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 KRTAP1-5Q9BYS1 174 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 PARLQ9H300 379 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 PHLDA3Q9Y5J5 127 aa10.42□□□□□ -0.74
LIMS3-201ENST00000437679 BTF3P20290 206 aaKnown RBP10.41□□□□□ -0.74
LIMS3-201ENST00000437679 RPL35P42766 123 aaKnown RBP10.41□□□□□ -0.74
LIMS3-201ENST00000437679 ZFP2Q6ZN57 461 aa10.41□□□□□ -0.74
LIMS3-201ENST00000437679 DMRTA1Q5VZB9 504 aa10.4□□□□□ -0.74
LIMS3-201ENST00000437679 TRAV9-2A0A087WT02 112 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 PDE6DO43924 150 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 MEF2BQ02080 365 aaPredicted RBP10.39□□□□□ -0.75
LIMS3-201ENST00000437679 TNP2Q05952 138 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 PRR27Q6MZM9 219 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 ZFP82Q8N141 532 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 DERL1Q9BUN8 251 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 SCRT2Q9NQ03 307 aa10.39□□□□□ -0.75
LIMS3-201ENST00000437679 M0R381 172 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 RHODO00212 210 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 CXCL1P09341 107 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 MED14OSP0DP75 135 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 BCL2P10415 239 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 TAGLN2P37802 199 aaKnown RBP10.38□□□□□ -0.75
LIMS3-201ENST00000437679 TIRAPP58753 221 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 CENPWQ5EE01 88 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 ZNF575Q86XF7 245 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 JPT2Q9H910 190 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 VAX2Q9UIW0 290 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 LY96Q9Y6Y9 160 aa10.38□□□□□ -0.75
LIMS3-201ENST00000437679 PKD1P98161 4303 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 RPL19P84098 196 aaKnown RBP10.37□□□□□ -0.75
LIMS3-201ENST00000437679 Q6ZSN1 163 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 WFDC10BQ8IUB3 73 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 SFRP2Q96HF1 295 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 SAMD10Q9BYL1 202 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 MED9Q9NWA0 146 aa10.37□□□□□ -0.75
LIMS3-201ENST00000437679 PKHD1P08F94 4074 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 A0A1B0GVG6 124 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 EVI2AP22794 236 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 GNG4P50150 75 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 LINC00315P59091 139 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 BLOC1S1P78537 153 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 FAM74A4Q5TZK3 123 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 UFSP1Q6NVU6 142 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 ALKAL2Q6UX46 152 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 ATP6V0E2Q8NHE4 81 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 DNAH11Q96DT5 4516 aa10.36□□□□□ -0.75
LIMS3-201ENST00000437679 TRAV8-6A0A0B4J262 113 aa10.35□□□□□ -0.75
LIMS3-201ENST00000437679 RAB19A4D1S5 217 aa10.35□□□□□ -0.75
LIMS3-201ENST00000437679 K7EP13 123 aa10.35□□□□□ -0.75
LIMS3-201ENST00000437679 DAZAP1Q96EP5 407 aaKnown RBP10.35□□□□□ -0.75
LIMS3-201ENST00000437679 SMIM12Q96EX1 92 aa10.35□□□□□ -0.75
LIMS3-201ENST00000437679 BOLA1Q9Y3E2 137 aa10.35□□□□□ -0.75
LIMS3-201ENST00000437679 A0A087WWL8 130 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms