RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 C1orf122Q6ZSJ8 110 aa9.53□□□□□ -0.88
CDH3-202ENST00000429102 TRAV12-2A0A075B6T6 113 aa9.52□□□□□ -0.88
CDH3-202ENST00000429102 GAGE12HA6NDE8 117 aa9.52□□□□□ -0.88
CDH3-202ENST00000429102 RPL39P62891 51 aaKnown RBP9.52□□□□□ -0.88
CDH3-202ENST00000429102 TMEM95Q3KNT9 176 aa9.52□□□□□ -0.88
CDH3-202ENST00000429102 DUX5Q96PT3 197 aa9.52□□□□□ -0.88
CDH3-202ENST00000429102 NAV2Q8IVL1 2488 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 LINC01549A6NIU2 74 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 HIST2H2BDQ6DRA6 164 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 OR10J6PQ8NGY7 276 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 IGHV7-4-1A0A0J9YVY3 117 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 M0R1W7 72 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 C2orf66Q6UXQ4 117 aa9.52□□□□□ -0.89
CDH3-202ENST00000429102 OPRPNQ99935 248 aaPredicted RBP9.52□□□□□ -0.89
CDH3-202ENST00000429102 NPC2P61916 151 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 BLCAPP62952 87 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 LINC01559Q495D7 138 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 Q6ZS46 218 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 RAX2Q96IS3 184 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 PRADC1Q9BSG0 188 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 IGHV3-73A0A0B4J1V6 119 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 TRAV12-3A0A0B4J271 114 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 DUSP14O95147 198 aaKnown RBP9.51□□□□□ -0.89
CDH3-202ENST00000429102 IGF2-ASQ6U949 168 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 NRACQ8N912 160 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 PLEKHB2Q96CS7 222 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 C20orf78Q9BR46 151 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 K7ENP7 123 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 CIDEAO60543 219 aa9.51□□□□□ -0.89
CDH3-202ENST00000429102 SUMO2P61956 95 aaKnown RBP9.51□□□□□ -0.89
CDH3-202ENST00000429102 FAM110DQ8TAY7 271 aaPredicted RBP9.51□□□□□ -0.89
CDH3-202ENST00000429102 PRSS29PA6NIE9 313 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 HOXA3O43365 443 aaPredicted RBP9.5□□□□□ -0.89
CDH3-202ENST00000429102 SLC50A1Q9BRV3 221 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 SMIM2Q9BVW6 85 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 A0A087WX48 190 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 EPG5Q9HCE0 2579 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 TRAV41A0A0B4J266 112 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 ZFP2Q6ZN57 461 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 GATD1Q8NB37 220 aa9.5□□□□□ -0.89
CDH3-202ENST00000429102 PRSS2P07478 247 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 ASIPP42127 132 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 SYT8Q8NBV8 401 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 SIVA1O15304 175 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 CKS1BP61024 79 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 MAPK1IP1LQ8NDC0 245 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 SPAG8Q99932 426 aaPredicted RBP9.49□□□□□ -0.89
CDH3-202ENST00000429102 PIEZO1Q92508 2521 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 H7C1H1 209 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 NPFFO15130 113 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 CD7P09564 240 aa9.49□□□□□ -0.89
CDH3-202ENST00000429102 CENPVL3A0A0U1RRI6 287 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 ADARB2-AS1A8MUL3 147 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 ZNF688P0C7X2 276 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 RASL10AQ92737 203 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 F8VRH5 84 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 NDUFS8O00217 210 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 PRM2P04554 102 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 PKD1L2Q7Z442 2459 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 IGLV2-18A0A075B6J9 118 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 RAB9AP51151 201 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 RNASE13Q5GAN3 156 aaKnown RBP9.48□□□□□ -0.89
CDH3-202ENST00000429102 FOXI2Q6ZQN5 318 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 TP53TG1Q9Y2A0 90 aa9.48□□□□□ -0.89
CDH3-202ENST00000429102 MYMXA0A1B0GTQ4 84 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 H3BUX3 64 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 Q8N6K4 173 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 SPOCK3Q9BQ16 436 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 KLK9Q9UKQ9 250 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 CLUHP3Q96NS8 147 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 SIRPDQ9H106 197 aa9.47□□□□□ -0.89
CDH3-202ENST00000429102 C10orf99Q6UWK7 81 aa9.46□□□□□ -0.89
CDH3-202ENST00000429102 RHPN1-AS1Q9BWJ2 59 aa9.46□□□□□ -0.89
CDH3-202ENST00000429102 FBN2P35556 2912 aa9.46□□□□□ -0.89
CDH3-202ENST00000429102 IGHV4-38-2P0DP08 117 aa9.46□□□□□ -0.89
CDH3-202ENST00000429102 A0A0U1RRA0 63 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 A0A1B0GV72 72 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 UBE2E1P51965 193 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 ZNF56Q15929 161 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 MINOS1Q5TGZ0 78 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 MINOS1-NBL1R4GNA1 71 aa9.46□□□□□ -0.9
CDH3-202ENST00000429102 TRAV21A0A0B4J279 112 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 IGHV4-39P01824 125 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 FAM159AQ6UWV7 190 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 BAALCQ8WXS3 180 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 TRAV2A0A0B4J234 112 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 LGALS1P09382 135 aaKnown RBP9.45□□□□□ -0.9
CDH3-202ENST00000429102 PHLDA1Q8WV24 401 aaPredicted RBP9.45□□□□□ -0.9
CDH3-202ENST00000429102 DPH3P1Q9H4G8 78 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 CFAP46Q8IYW2 2715 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 SPINK8P0C7L1 97 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 PLNP26678 52 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 NRGNQ92686 78 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 ABCA2Q9BZC7 2435 aa9.45□□□□□ -0.9
CDH3-202ENST00000429102 ZMAT4Q9H898 229 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 C11orf86A6NJI1 115 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 C19orf84I3L1E1 186 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 RRN3P1Q2M238 152 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 SMPXQ9UHP9 88 aa9.44□□□□□ -0.9
CDH3-202ENST00000429102 MTORP42345 2549 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms