RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 Q6ZS46 218 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 FAM223AQ8IWN6 122 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 DKK2Q9UBU2 259 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 H3BVH4 76 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 NMUP48645 174 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 LGALS9BQ3B8N2 356 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 LGALS9CQ6DKI2 356 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 NEGR1Q7Z3B1 354 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 YAE1D1Q9NRH1 226 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 U3KQE9 123 aa8.12□□□□□ -1.11
CUX1-205ENST00000425244 BAHCC1Q9P281 2608 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 PRR9Q5T870 116 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 C2orf91Q6ZV80 131 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 GLMPQ8WWB7 406 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 DPF1Q92782 380 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 KLK15Q9H2R5 256 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 HIVEP2P31629 2446 aa8.11□□□□□ -1.11
CUX1-205ENST00000425244 HOXA3O43365 443 aaPredicted RBP8.1□□□□□ -1.11
CUX1-205ENST00000425244 PRSS1P07477 247 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 C19orf54Q5BKX5 351 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 UFSP1Q6NVU6 142 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 C9orf47Q6ZRZ4 202 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 MRPL53Q96EL3 112 aaKnown RBP8.1□□□□□ -1.11
CUX1-205ENST00000425244 HIVEP1P15822 2718 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.113e-10■■■■■ 76.4
CUX1-205ENST00000425244 ANK3Q12955 4377 aaKnown RBP8.1□□□□□ -1.11
CUX1-205ENST00000425244 IGHV7-4-1A0A0J9YVY3 117 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 TCTEX1D4Q5JR98 221 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 C9orf139Q6ZV77 190 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 OR2K2Q8NGT1 345 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 TMEM158Q8WZ71 300 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 NXT2Q9NPJ8 142 aaKnown RBP8.1□□□□□ -1.11
CUX1-205ENST00000425244 PEF1Q9UBV8 284 aaKnown RBP8.1□□□□□ -1.11
CUX1-205ENST00000425244 A6NDX4 124 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 GAGE10A6NGK3 116 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 F6UB75 175 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 OR10J6PQ8NGY7 276 aa8.1□□□□□ -1.11
CUX1-205ENST00000425244 M0R381 172 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 SMIM17P0DL12 118 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 FGF6P10767 208 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 SRD5A1P18405 259 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 FCER1GP30273 86 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 PCP2Q8IVA1 136 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 OR4X2Q8NGF9 303 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 NDUFA4O00483 81 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 CD5LO43866 347 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 TSPAN13O95857 204 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 TMEM97Q5BJF2 176 aa8.09□□□□□ -1.11
CUX1-205ENST00000425244 S100A4P26447 101 aaKnown RBP8.08□□□□□ -1.12
CUX1-205ENST00000425244 GPHB5Q86YW7 130 aa8.08□□□□□ -1.12
CUX1-205ENST00000425244 NPFFR1Q9GZQ6 430 aa8.08□□□□□ -1.12
CUX1-205ENST00000425244 C7orf71A4D174 169 aa8.08□□□□□ -1.12
CUX1-205ENST00000425244 TM4SF20Q53R12 229 aa8.08□□□□□ -1.12
CUX1-205ENST00000425244 Q8N8P6 123 aa8.08□□□□□ -1.12
CUX1-205ENST00000425244 BRI3O95415 125 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 RNASE4P34096 147 aaKnown RBP8.07□□□□□ -1.12
CUX1-205ENST00000425244 HERV-K104P63124 156 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 GTF2H5Q6ZYL4 71 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 GEMIN7Q9H840 131 aaKnown RBP8.07□□□□□ -1.12
CUX1-205ENST00000425244 A4D1N5 150 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 FSHBP01225 129 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 IGHG2P01859 326 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 CRIP2P52943 208 aaPredicted RBP8.07□□□□□ -1.12
CUX1-205ENST00000425244 KRTAP1-1Q07627 177 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 HSD52Q0P140 79 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 KIR3DS1Q14943 382 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 BOD1L2Q8IYS8 172 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 RHPN1-AS1Q9BWJ2 59 aa8.07□□□□□ -1.12
CUX1-205ENST00000425244 Q6YL49 198 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 ZFAND2AQ8N6M9 145 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 NRACQ8N912 160 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 MRAP2Q96G30 205 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 USMG5Q96IX5 58 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 TTTY13Q9BZ97 58 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 EDN2P20800 178 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 LINC00477Q96M19 166 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 FAM110AQ9BQ89 295 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 VPREB3Q9UKI3 123 aa8.06□□□□□ -1.12
CUX1-205ENST00000425244 TRAV21A0A0B4J279 112 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 OVOL1O14753 267 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 LAGE3Q14657 143 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 PHLDA3Q9Y5J5 127 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 IGLV2-18A0A075B6J9 118 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 OR11H12B2RN74 326 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 SOCS3O14543 225 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 MGPP08493 103 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 ASIPP42127 132 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 ANXA2RQ3ZCQ2 193 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 GTSCR1Q86UQ5 136 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 MTURNQ8N3F0 131 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 C14orf178Q8N769 122 aaPredicted RBP8.05□□□□□ -1.12
CUX1-205ENST00000425244 OR11H1Q8NG94 326 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 OR11H2Q8NH07 326 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 NAA38Q9BRA0 125 aaKnown RBP8.05□□□□□ -1.12
CUX1-205ENST00000425244 TMEM160Q9NX00 188 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 IGKV2D-26A0A0A0MRZ7 120 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 LINC01546A6NGU7 62 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 C10orf99Q6UWK7 81 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 MYOZ3Q8TDC0 251 aa8.05□□□□□ -1.12
CUX1-205ENST00000425244 SS18L2Q9UHA2 77 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms