RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NDUFAF3Q9BU61 184 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 OTORQ9NRC9 128 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TMEM167BQ9NRX6 74 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CTXND1A0A1B0GTU2 59 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TEX48A0A1B0GUV7 120 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 PGPA6NDG6 321 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 UMAD1C9J7I0 102 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 M0R2Z0 102 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 M0R3E3 92 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 BCL2L11O43521 198 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 C1QBP02746 253 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CT45A10P0DMU9 189 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CRISP2P16562 243 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 GCHFRP30047 84 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TAS2R60P59551 318 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 SPINK13Q1W4C9 94 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TMEM78Q5T7P6 136 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CEMP1Q6PRD7 247 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF493Q6ZR52 646 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 BAP18Q8IXM2 172 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 POM121L12Q8N7R1 296 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 STOML3Q8TAV4 291 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CMTM2Q8TAZ6 248 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 PHYHIPLQ96FC7 376 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 LINC01587Q99440 93 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF471Q9BX82 626 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 AGPAT4-IT1Q9H0P7 198 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 SH3BGRL3Q9H299 93 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 Q9H3A6 140 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF492Q9P255 531 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 KLK5Q9Y337 293 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 LENEPQ9Y5L5 61 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 IGHV3OR16-12A0A075B7B8 117 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 SERTM2A0A1B0GWG4 89 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 A0A1W2PRE2 83 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 NUPR2A6NF83 97 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 FBLL1A6NHQ2 334 aaKnown RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 KLLNB2CW77 178 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 C11orf94C9JXX5 98 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 H7BYZ3 331 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 K7EQM0 130 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 DEFB4AO15263 64 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 PFDN1O60925 122 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 SPART-AS1P0CW21 52 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ARL14EPLP0DKL9 152 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TPT1P13693 172 aaKnown RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF138P52744 262 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 TCTAP57738 103 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ERCC8Q13216 396 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 LGALSLQ3ZCW2 172 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 ZFAND6Q6FIF0 208 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 EIF5AL1Q6IS14 154 aaKnown RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 DPPA3Q6W0C5 159 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 AKAP14Q86UN6 197 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 MBD3L1Q8WWY6 194 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 FAM19A4Q96LR4 140 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 LINC00467Q9BRT7 94 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 NKX6-2Q9C056 277 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-208ENST00000423463 JPT2Q9H910 190 aa1.75□□□□□ -2.13
VPS13A-208ENST00000423463 CMYA5Q8N3K9 4069 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 AGRNO00468 2067 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV12-2A0A075B6T6 113 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 IGKV2-40A0A087WW87 121 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV10A0A0B4J240 114 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 IGHV3-16A0A0C4DH30 117 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 C7orf71A4D174 169 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 MAP1LC3B2A6NCE7 125 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF705GA8MUZ8 300 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 KRTAP9-6A8MVA2 160 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 HMGB3O15347 200 aaKnown RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 EIF3GO75821 320 aaKnown RBP eCLIP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 IGKV2D-40P01614 121 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 GPX1P07203 203 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 RAB5CP51148 216 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF726P1Q15940 193 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 SLC51BQ86UW2 128 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ZFAND2AQ8N6M9 145 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 C5orf17Q8NAS9 161 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 NIPSNAP3BQ9BS92 247 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 MAP1LC3BQ9GZQ8 125 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 EPDR1Q9UM22 224 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TGP01266 2768 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV1-1A0A0B4J248 108 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TRAV12-3A0A0B4J271 114 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 LYRM9A8MSI8 78 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 F6UZH7 168 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ZNF324O75467 553 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 TCRAP04437 139 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 PRB4P10163 310 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 AZU1P20160 251 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 RNASE4P34096 147 aaKnown RBP1.74□□□□□ -2.13
VPS13A-208ENST00000423463 PPT1P50897 306 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 EMP1P54849 157 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 C12orf74Q32Q52 190 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 SAPCD1Q5SSQ6 148 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 LINC00242Q5T6M2 205 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 FAM222AQ5U5X8 452 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 ATRAIDQ6UW56 229 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 GOLT1AQ6ZVE7 132 aa1.74□□□□□ -2.13
VPS13A-208ENST00000423463 SSX7Q7RTT5 188 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms