RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR10J6PQ8NGY7 276 aa9.96□□□□□ -0.81
LIMS1-204ENST00000409441 C20orf173Q96LM9 149 aa9.96□□□□□ -0.81
LIMS1-204ENST00000409441 TMEM191AQ9H0A3 160 aa9.96□□□□□ -0.81
LIMS1-204ENST00000409441 IGHV1-24A0A0C4DH33 117 aa9.96□□□□□ -0.82
LIMS1-204ENST00000409441 TRBV7-9A0A0J9YWB2 115 aa9.96□□□□□ -0.82
LIMS1-204ENST00000409441 TWIST1Q15672 202 aa9.96□□□□□ -0.82
LIMS1-204ENST00000409441 KPRPQ5T749 579 aaPredicted RBP9.96□□□□□ -0.82
LIMS1-204ENST00000409441 ORMDL3Q8N138 153 aa9.96□□□□□ -0.82
LIMS1-204ENST00000409441 SORL1Q92673 2214 aa9.95□□□□□ -0.82
LIMS1-204ENST00000409441 LBHQ53QV2 105 aaPredicted RBP9.95□□□□□ -0.82
LIMS1-204ENST00000409441 CMYA5Q8N3K9 4069 aa9.95□□□□□ -0.82
LIMS1-204ENST00000409441 NOTCH1P46531 2555 aa9.95□□□□□ -0.82
LIMS1-204ENST00000409441 IGKV3D-20A0A0C4DH25 116 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 LEPROTL1O95214 131 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 CD7P09564 240 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 ID1P41134 155 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 MRPL51Q4U2R6 128 aaKnown RBP9.94□□□□□ -0.82
LIMS1-204ENST00000409441 EBLN2Q6P2I7 272 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 GTSCR1Q86UQ5 136 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 AMN1Q8IY45 258 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 PRELID3AQ96N28 172 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 TMEM70Q9BUB7 260 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 NBEAL1Q6ZS30 2694 aa9.94□□□□□ -0.82
LIMS1-204ENST00000409441 CRXO43186 299 aaPredicted RBP9.93□□□□□ -0.82
LIMS1-204ENST00000409441 PPBPP02775 128 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 ZNF688P0C7X2 276 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 CMC4P56277 68 aaPredicted RBP9.93□□□□□ -0.82
LIMS1-204ENST00000409441 SNRPD3P62318 126 aaKnown RBP9.93□□□□□ -0.82
LIMS1-204ENST00000409441 FA2HQ7L5A8 372 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 MRPL52Q86TS9 123 aaKnown RBP9.93□□□□□ -0.82
LIMS1-204ENST00000409441 AP5S1Q9NUS5 200 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 HSPB8Q9UJY1 196 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 PAM16Q9Y3D7 125 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 D6R8Y8 96 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 CACNG7P62955 275 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 TDRG1Q3Y452 100 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 APRG1Q8IVJ8 170 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 Q8N1Y9 231 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 PRSS3P2Q8NHM4 247 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 FAM19A4Q96LR4 140 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 MIEN1Q9BRT3 115 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 C11orf21Q9P2W6 132 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 LAMTOR2Q9Y2Q5 125 aa9.93□□□□□ -0.82
LIMS1-204ENST00000409441 IGHV4-4A0A075B6R2 117 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 TRAV21A0A0B4J279 112 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 C20orf202A1L168 122 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 SNAI2O43623 268 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 PRB2P02812 416 aaPredicted RBP9.92□□□□□ -0.82
LIMS1-204ENST00000409441 DEFB131AP59861 70 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 ODF3L2Q3SX64 289 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 PSMG4Q5JS54 123 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 OR8A1Q8NGG7 326 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 C19orf73Q9NVV2 129 aa9.92□□□□□ -0.82
LIMS1-204ENST00000409441 OR11H12B2RN74 326 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 CKS2P33552 79 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 SPATA45Q537H7 98 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 ZFAND2AQ8N6M9 145 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 OR10AG1Q8NH19 301 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 FAM110AQ9BQ89 295 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 MAP6D1Q9H9H5 199 aa9.91□□□□□ -0.82
LIMS1-204ENST00000409441 SYS1-DBNDD2H3BUS1 97 aa9.9□□□□□ -0.82
LIMS1-204ENST00000409441 LCE2AQ5TA79 106 aaPredicted RBP9.9□□□□□ -0.82
LIMS1-204ENST00000409441 PET117Q6UWS5 81 aa9.9□□□□□ -0.82
LIMS1-204ENST00000409441 SMIM15Q7Z3B0 74 aa9.9□□□□□ -0.82
LIMS1-204ENST00000409441 RNF185Q96GF1 192 aa9.9□□□□□ -0.82
LIMS1-204ENST00000409441 MAP1LC3CQ9BXW4 147 aa9.9□□□□□ -0.82
LIMS1-204ENST00000409441 MUC21A0A0G2JKD1 596 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 MUC21A0A140T8X8 626 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 MED14OSP0DP75 135 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 ZNF124Q15973 351 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 MUC21Q5SSG8 566 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 PRR9Q5T870 116 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 DEFB125Q8N687 156 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 C2orf88Q9BSF0 95 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 WFDC10AQ9H1F0 79 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 TRAV9-2A0A087WT02 112 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 IFI27P40305 119 aaPredicted RBP9.89□□□□□ -0.83
LIMS1-204ENST00000409441 SSTP61278 116 aa9.89□□□□□ -0.83
LIMS1-204ENST00000409441 DEFB1P60022 68 aa9.88□□□□□ -0.83
LIMS1-204ENST00000409441 ODF3Q96PU9 254 aa9.88□□□□□ -0.83
LIMS1-204ENST00000409441 MAP1LC3AQ9H492 121 aa9.88□□□□□ -0.83
LIMS1-204ENST00000409441 MSRB1Q9NZV6 116 aa9.88□□□□□ -0.83
LIMS1-204ENST00000409441 UQCR10Q9UDW1 63 aa9.88□□□□□ -0.83
LIMS1-204ENST00000409441 LINC01546A6NGU7 62 aa9.87□□□□□ -0.83
LIMS1-204ENST00000409441 KNCNA6PVL3 124 aa9.87□□□□□ -0.83
LIMS1-204ENST00000409441 M0R143 59 aa9.87□□□□□ -0.83
LIMS1-204ENST00000409441 NPYP01303 97 aa9.87□□□□□ -0.83
LIMS1-204ENST00000409441 ZNF705AQ6ZN79 300 aaPredicted RBP9.87□□□□□ -0.83
LIMS1-204ENST00000409441 SPATA12Q7Z6I5 190 aa9.87□□□□□ -0.83
LIMS1-204ENST00000409441 F6UB75 175 aa9.86□□□□□ -0.83
LIMS1-204ENST00000409441 K7EIL1 84 aa9.86□□□□□ -0.83
LIMS1-204ENST00000409441 IGLC3P0DOY3 106 aa9.86□□□□□ -0.83
LIMS1-204ENST00000409441 SPANXN1Q5VSR9 72 aa9.86□□□□□ -0.83
LIMS1-204ENST00000409441 LINC00173Q6ZV60 143 aa9.86□□□□□ -0.83
LIMS1-204ENST00000409441 LOC389332A0A1B0GUA5 103 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 KLLNB2CW77 178 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 IGHV4-30-4P0DP06 118 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 ASIPP42127 132 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 FOXI2Q6ZQN5 318 aa9.85□□□□□ -0.83
LIMS1-204ENST00000409441 NXT2Q9NPJ8 142 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 315.9 ms