RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OCIAD2Q56VL3 154 aa14.25□□□□□ -0.13
USP48-204ENST00000400301 CDKN1BP46527 198 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 GAGE13Q4V321 117 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 KLHL30-AS1Q8NEE0 82 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 SIVA1O15304 175 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 HLA-DRB4P13762 266 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 TCTEX1D4Q5JR98 221 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 RPL39LQ96EH5 51 aaKnown RBP14.24□□□□□ -0.13
USP48-204ENST00000400301 HLA-DRB4X5D2U9 266 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 TTTY13Q9BZ97 58 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 NRGNQ92686 78 aa14.24□□□□□ -0.13
USP48-204ENST00000400301 VCANP13611 3396 aa14.23□□□□□ -0.13
USP48-204ENST00000400301 PRADC1Q9BSG0 188 aa14.23□□□□□ -0.13
USP48-204ENST00000400301 MYO18BQ8IUG5 2567 aa14.23□□□□□ -0.13
USP48-204ENST00000400301 SMAD5-AS1Q9Y6J3 95 aa14.23□□□□□ -0.13
USP48-204ENST00000400301 IGLC6P0CF74 106 aa14.23□□□□□ -0.13
USP48-204ENST00000400301 ZNF415Q09FC8 603 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 TRPT1Q86TN4 253 aaKnown RBP14.22□□□□□ -0.13
USP48-204ENST00000400301 YAE1D1Q9NRH1 226 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 PGPEP1Q9NXJ5 209 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 SPATA12Q7Z6I5 190 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 TRGV2A0A075B6R0 118 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 SONP18583 2426 aaKnown RBP14.22□□□□□ -0.13
USP48-204ENST00000400301 K7ERJ3 54 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 PMVKQ15126 192 aa14.22□□□□□ -0.13
USP48-204ENST00000400301 IGHG2P01859 326 aa14.21□□□□□ -0.13
USP48-204ENST00000400301 Q8N6K4 173 aa14.21□□□□□ -0.13
USP48-204ENST00000400301 ZFAND3Q9H8U3 227 aa14.21□□□□□ -0.13
USP48-204ENST00000400301 MYMXA0A1B0GTQ4 84 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 TAX1BP3O14907 124 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 RAI1Q7Z5J4 1906 aaPredicted RBP14.2□□□□□ -0.14
USP48-204ENST00000400301 PRSS29PA6NIE9 313 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 NACAE9PAV3 2078 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 TRBV25-1A0A075B6N4 114 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 UBE2E2Q96LR5 201 aa14.2□□□□□ -0.14
USP48-204ENST00000400301 Q5PR19 223 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 ATP6V0BQ99437 205 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 A0A1W2PPM0 123 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 K7EP34 96 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 MRGPRG-AS1Q2M3A8 158 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 Q71RC1 249 aaPredicted RBP14.19□□□□□ -0.14
USP48-204ENST00000400301 Q8N976 141 aa14.19□□□□□ -0.14
USP48-204ENST00000400301 J3QLI3 93 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 BOD1L2Q8IYS8 172 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 CRXO43186 299 aaPredicted RBP14.18□□□□□ -0.14
USP48-204ENST00000400301 ELANEP08246 267 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 SRSF2Q01130 221 aaKnown RBP14.18□□□□□ -0.14
USP48-204ENST00000400301 PHLDA1Q8WV24 401 aaPredicted RBP14.18□□□□□ -0.14
USP48-204ENST00000400301 VPS13AQ96RL7 3174 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 PF4P02776 101 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 CEND1Q8N111 149 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 PLEKHB2Q96CS7 222 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 TMEM141Q96I45 108 aa14.18□□□□□ -0.14
USP48-204ENST00000400301 TRGV1A0A0A0MS02 117 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 K7EP13 123 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 TMEM101Q96IK0 257 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 SPXQ9BT56 116 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 ODF1Q14990 250 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 A0A0U1RRA0 63 aa14.17□□□□□ -0.14
USP48-204ENST00000400301 HOXD3P31249 432 aaPredicted RBP14.17□□□□□ -0.14
USP48-204ENST00000400301 TMEM238C9JI98 176 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 ADAMTSL5Q6ZMM2 481 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 IGHV3-53P01767 116 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 URB1-AS1Q96HZ7 61 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 INSP01308 110 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 XCL2Q9UBD3 114 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 VPREB3Q9UKI3 123 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 ERG28Q9UKR5 140 aa14.16□□□□□ -0.14
USP48-204ENST00000400301 LINC01619G3V211 115 aa14.15□□□□□ -0.14
USP48-204ENST00000400301 MTURNQ8N3F0 131 aa14.15□□□□□ -0.14
USP48-204ENST00000400301 TOMM7Q9P0U1 55 aa14.15□□□□□ -0.14
USP48-204ENST00000400301 A6NDX4 124 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 I3L3M4 83 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 DEFB136Q30KP8 78 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 Q96MF0 132 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 SETD2Q9BYW2 2564 aaPredicted RBP14.14□□□□□ -0.15
USP48-204ENST00000400301 WDFY4Q6ZS81 3184 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 DSCAML1Q8TD84 2053 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 K7EMI3 77 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 IGF1P05019 195 aa14.14□□□□□ -0.15
USP48-204ENST00000400301 MRPS12O15235 138 aaKnown RBP14.14□□□□□ -0.15
USP48-204ENST00000400301 DLX4Q92988 240 aaPredicted RBP14.14□□□□□ -0.15
USP48-204ENST00000400301 SAP30O75446 220 aa14.13□□□□□ -0.15
USP48-204ENST00000400301 COPS9Q8WXC6 57 aa14.13□□□□□ -0.15
USP48-204ENST00000400301 LGALS1P09382 135 aaKnown RBP14.13□□□□□ -0.15
USP48-204ENST00000400301 IGHV3-16A0A0C4DH30 117 aa14.13□□□□□ -0.15
USP48-204ENST00000400301 NPC2P61916 151 aa14.13□□□□□ -0.15
USP48-204ENST00000400301 RNASE8Q8TDE3 154 aaKnown RBP14.13□□□□□ -0.15
USP48-204ENST00000400301 FXYD2P54710 66 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 TAL2Q16559 108 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 SNCGO76070 127 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 SUMO4Q6EEV6 95 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 TIMM21Q9BVV7 248 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 A8MWV9 139 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 TMEM262E9PQX1 116 aa14.12□□□□□ -0.15
USP48-204ENST00000400301 RPL36AP83881 106 aaKnown RBP14.11□□□□□ -0.15
USP48-204ENST00000400301 RPL36ALQ969Q0 106 aaKnown RBP14.11□□□□□ -0.15
USP48-204ENST00000400301 C12orf74Q32Q52 190 aa14.11□□□□□ -0.15
USP48-204ENST00000400301 K7EMT4 169 aa14.11□□□□□ -0.15
USP48-204ENST00000400301 FOXI2Q6ZQN5 318 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms