RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TXNDC17Q9BRA2 123 aa19.66■□□□□ 0.74
HMGB1-205ENST00000399494 BOLA1Q9Y3E2 137 aa19.66■□□□□ 0.74
HMGB1-205ENST00000399494 H3BNG1 76 aa19.65■□□□□ 0.74
HMGB1-205ENST00000399494 IGHV3-53P01767 116 aa19.65■□□□□ 0.74
HMGB1-205ENST00000399494 KRTAP10-2P60368 255 aa19.65■□□□□ 0.74
HMGB1-205ENST00000399494 SCRT2Q9NQ03 307 aa19.65■□□□□ 0.74
HMGB1-205ENST00000399494 A0A1W2PPQ1 181 aa19.64■□□□□ 0.73
HMGB1-205ENST00000399494 M0R2P5 195 aa19.64■□□□□ 0.73
HMGB1-205ENST00000399494 BTF3P20290 206 aaKnown RBP19.64■□□□□ 0.73
HMGB1-205ENST00000399494 NHLRC2Q8NBF2 726 aa19.64■□□□□ 0.73
HMGB1-205ENST00000399494 ORM1P02763 201 aa19.63■□□□□ 0.73
HMGB1-205ENST00000399494 BLOC1S1P78537 153 aa19.63■□□□□ 0.73
HMGB1-205ENST00000399494 FAM162BQ5T6X4 162 aa19.63■□□□□ 0.73
HMGB1-205ENST00000399494 COX8CQ7Z4L0 72 aa19.63■□□□□ 0.73
HMGB1-205ENST00000399494 RASL10AQ92737 203 aa19.63■□□□□ 0.73
HMGB1-205ENST00000399494 MRPS16Q9Y3D3 137 aaKnown RBP19.63■□□□□ 0.73
HMGB1-205ENST00000399494 MEF2BQ02080 365 aaPredicted RBP19.62■□□□□ 0.73
HMGB1-205ENST00000399494 SH2D1AO60880 128 aa19.61■□□□□ 0.73
HMGB1-205ENST00000399494 BCL2P10415 239 aa19.61■□□□□ 0.73
HMGB1-205ENST00000399494 S100A4P26447 101 aaKnown RBP19.61■□□□□ 0.73
HMGB1-205ENST00000399494 BAGE2Q86Y30 109 aa19.61■□□□□ 0.73
HMGB1-205ENST00000399494 B4DEV8 164 aa19.6■□□□□ 0.73
HMGB1-205ENST00000399494 CRIP1P50238 77 aa19.6■□□□□ 0.73
HMGB1-205ENST00000399494 C11orf52Q96A22 123 aa19.6■□□□□ 0.73
HMGB1-205ENST00000399494 IGKV3D-20A0A0C4DH25 116 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 M0R036 132 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 PDE6DO43924 150 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 ASIPP42127 132 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 RPL35P42766 123 aaKnown RBP19.59■□□□□ 0.73
HMGB1-205ENST00000399494 ZNF674Q2M3X9 581 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 VAX2Q9UIW0 290 aa19.59■□□□□ 0.73
HMGB1-205ENST00000399494 TRGV4A0A0C4DH28 118 aa19.58■□□□□ 0.72
HMGB1-205ENST00000399494 C9JCJ5 164 aa19.58■□□□□ 0.72
HMGB1-205ENST00000399494 TAGLN2P37802 199 aaKnown RBP19.58■□□□□ 0.72
HMGB1-205ENST00000399494 VSIG2Q96IQ7 327 aa19.58■□□□□ 0.72
HMGB1-205ENST00000399494 SFTA3P0C7M3 94 aa19.57■□□□□ 0.72
HMGB1-205ENST00000399494 ZNF876PQ49A33 203 aa19.57■□□□□ 0.72
HMGB1-205ENST00000399494 OR4C5Q8NGB2 326 aa19.57■□□□□ 0.72
HMGB1-205ENST00000399494 C9orf85Q96MD7 179 aa19.57■□□□□ 0.72
HMGB1-205ENST00000399494 DERL1Q9BUN8 251 aa19.57■□□□□ 0.72
HMGB1-205ENST00000399494 TRAV4A0A0B4J268 109 aa19.56■□□□□ 0.72
HMGB1-205ENST00000399494 SLAQ13239 276 aa19.56■□□□□ 0.72
HMGB1-205ENST00000399494 ZNF479Q96JC4 524 aa19.56■□□□□ 0.72
HMGB1-205ENST00000399494 A0A096LPF7 62 aa19.55■□□□□ 0.72
HMGB1-205ENST00000399494 KRBOX1C9JBD0 128 aa19.55■□□□□ 0.72
HMGB1-205ENST00000399494 RNASE3P12724 160 aaKnown RBP19.55■□□□□ 0.72
HMGB1-205ENST00000399494 MED9Q9NWA0 146 aa19.55■□□□□ 0.72
HMGB1-205ENST00000399494 PRO0255Q9UI72 69 aa19.55■□□□□ 0.72
HMGB1-205ENST00000399494 PAX4O43316 350 aa19.54■□□□□ 0.72
HMGB1-205ENST00000399494 FHL2Q14192 279 aa19.54■□□□□ 0.72
HMGB1-205ENST00000399494 PRR27Q6MZM9 219 aa19.54■□□□□ 0.72
HMGB1-205ENST00000399494 HHLA3Q9XRX5 114 aa19.54■□□□□ 0.72
HMGB1-205ENST00000399494 TMSB15BA0A087X1C1 80 aa19.53■□□□□ 0.72
HMGB1-205ENST00000399494 LINC01559Q495D7 138 aa19.53■□□□□ 0.72
HMGB1-205ENST00000399494 CENPWQ5EE01 88 aa19.53■□□□□ 0.72
HMGB1-205ENST00000399494 MLST8Q9BVC4 326 aa19.53■□□□□ 0.72
HMGB1-205ENST00000399494 GRIFINA4D1Z8 144 aa19.52■□□□□ 0.72
HMGB1-205ENST00000399494 H3BVH4 76 aa19.52■□□□□ 0.72
HMGB1-205ENST00000399494 LINC00315P59091 139 aa19.52■□□□□ 0.72
HMGB1-205ENST00000399494 Q6ZRN7 208 aaPredicted RBP19.52■□□□□ 0.72
HMGB1-205ENST00000399494 CRYBA4P53673 196 aa19.51■□□□□ 0.71
HMGB1-205ENST00000399494 ZNF506Q5JVG8 444 aa19.51■□□□□ 0.71
HMGB1-205ENST00000399494 IL36BQ9NZH7 164 aa19.51■□□□□ 0.71
HMGB1-205ENST00000399494 PGPEP1LA6NFU8 196 aa19.5■□□□□ 0.71
HMGB1-205ENST00000399494 GNG4P50150 75 aa19.5■□□□□ 0.71
HMGB1-205ENST00000399494 RAB19A4D1S5 217 aa19.49■□□□□ 0.71
HMGB1-205ENST00000399494 MGST1P10620 155 aaKnown RBP19.49■□□□□ 0.71
HMGB1-205ENST00000399494 DNLZQ5SXM8 178 aa19.49■□□□□ 0.71
HMGB1-205ENST00000399494 LYPD6BQ8NI32 183 aa19.49■□□□□ 0.71
HMGB1-205ENST00000399494 PTH2Q96A98 100 aa19.49■□□□□ 0.71
HMGB1-205ENST00000399494 ICOSQ9Y6W8 199 aa19.49■□□□□ 0.71
HMGB1-205ENST00000399494 RBFOX3A6NFN3 312 aa19.48■□□□□ 0.71
HMGB1-205ENST00000399494 ARMS2P0C7Q2 107 aa19.48■□□□□ 0.71
HMGB1-205ENST00000399494 SIVA1O15304 175 aa19.47■□□□□ 0.71
HMGB1-205ENST00000399494 SYT8Q8NBV8 401 aa19.47■□□□□ 0.71
HMGB1-205ENST00000399494 PCNPQ8WW12 178 aaKnown RBP19.47■□□□□ 0.71
HMGB1-205ENST00000399494 RS1O15537 224 aa19.46■□□□□ 0.71
HMGB1-205ENST00000399494 CFAP126Q5VTH2 177 aa19.46■□□□□ 0.71
HMGB1-205ENST00000399494 PHLDA3Q9Y5J5 127 aa19.46■□□□□ 0.71
HMGB1-205ENST00000399494 RPL19P84098 196 aaKnown RBP19.45■□□□□ 0.7
HMGB1-205ENST00000399494 SMIM12Q96EX1 92 aa19.45■□□□□ 0.7
HMGB1-205ENST00000399494 PGPEP1Q9NXJ5 209 aa19.45■□□□□ 0.7
HMGB1-205ENST00000399494 CIDEAO60543 219 aa19.44■□□□□ 0.7
HMGB1-205ENST00000399494 DAZAP1Q96EP5 407 aaKnown RBP19.44■□□□□ 0.7
HMGB1-205ENST00000399494 EIF5A2Q9GZV4 153 aaKnown RBP19.44■□□□□ 0.7
HMGB1-205ENST00000399494 A8MWV9 139 aa19.43■□□□□ 0.7
HMGB1-205ENST00000399494 MRPL23Q16540 153 aaKnown RBP19.43■□□□□ 0.7
HMGB1-205ENST00000399494 TOR2AQ5JU69 321 aa19.43■□□□□ 0.7
HMGB1-205ENST00000399494 PIK3CD-AS1Q5SR53 167 aa19.43■□□□□ 0.7
HMGB1-205ENST00000399494 IGHV3-73A0A0B4J1V6 119 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 NXPH4O95158 308 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 IGLV2-8P01709 118 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 GYPEP15421 78 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 TEX261Q6UWH6 196 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 BIN3Q9NQY0 253 aa19.42■□□□□ 0.7
HMGB1-205ENST00000399494 TRBV20OR9-2A0A075B6H5 130 aa19.41■□□□□ 0.7
HMGB1-205ENST00000399494 EPM2AB3EWF7 344 aa19.41■□□□□ 0.7
HMGB1-205ENST00000399494 GATA1P15976 413 aaPredicted RBP19.41■□□□□ 0.7
HMGB1-205ENST00000399494 SRIP30626 198 aa19.41■□□□□ 0.7
HMGB1-205ENST00000399494 FUSP35637 526 aaKnown RBP eCLIP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms