RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 SRSF9Q13242 221 aaKnown RBP eCLIP4.14□□□□□ -1.75
ATG4A-204ENST00000372246 TMEM78Q5T7P6 136 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 CFAP126Q5VTH2 177 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 Q6ZUT4 128 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 C14orf178Q8N769 122 aaPredicted RBP4.14□□□□□ -1.75
ATG4A-204ENST00000372246 MYOZ3Q8TDC0 251 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 RASL10AQ92737 203 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 IGHV7-4-1A0A0J9YVY3 117 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 MYMXA0A1B0GTQ4 84 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 G3V318 75 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 CTSGP08311 255 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 MFAP4P55083 255 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 RPL39P62891 51 aaKnown RBP4.14□□□□□ -1.75
ATG4A-204ENST00000372246 LAGE3Q14657 143 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 ECSCRQ19T08 205 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 SPANXN1Q5VSR9 72 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 Q6AWC8 147 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 KRTAP1-3Q8IUG1 177 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 RNASE6Q93091 150 aaKnown RBP4.14□□□□□ -1.75
ATG4A-204ENST00000372246 SCGB3A1Q96QR1 104 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 BEX4Q9NWD9 120 aaPredicted RBP4.14□□□□□ -1.75
ATG4A-204ENST00000372246 HIGD1BQ9P298 99 aa4.14□□□□□ -1.75
ATG4A-204ENST00000372246 ZNF292O60281 2723 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 FABP5P3A8MUU1 101 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 CEACAM4O75871 244 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 DUSP14O95147 198 aaKnown RBP4.13□□□□□ -1.75
ATG4A-204ENST00000372246 SRD5A1P18405 259 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 Q6ZSV7 163 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 LINC00311Q8N616 119 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 Q8N8P6 123 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 LINC01560Q8TB33 94 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 C1QTNF4Q9BXJ3 329 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 NXT2Q9NPJ8 142 aaKnown RBP4.13□□□□□ -1.75
ATG4A-204ENST00000372246 C21orf62Q9NYP8 219 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 OTOGLQ3ZCN5 2332 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 ANKHD1Q8IWZ3 2542 aaKnown RBP4.13□□□□□ -1.75
ATG4A-204ENST00000372246 GNRH2O43555 120 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 LCE3BQ5TA77 95 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 ANKRD29Q8N6D5 301 aa4.13□□□□□ -1.75
ATG4A-204ENST00000372246 SORL1Q92673 2214 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 IGLV11-55A0A075B6I3 123 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 SMIM9A6NGZ8 99 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 J3QR89 54 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 NBR2O15453 112 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 RNASE1P07998 156 aaKnown RBP4.12□□□□□ -1.75
ATG4A-204ENST00000372246 UCNP55089 124 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 NPC2P61916 151 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 CLEC19AQ6UXS0 136 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 BAALCQ8WXS3 180 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 LINC00477Q96M19 166 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 AKAP9Q99996 3911 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 IGHV3OR16-10A0A075B7F0 116 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 TRAV8-2A0A0B4J237 113 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 TRAV4A0A0B4J268 109 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 TRBV6-1A0A0K0K1D8 114 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 CLPSL1A2RUU4 121 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 C11orf86A6NJI1 115 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 CCDC179H3BU77 68 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 ATP5LO75964 103 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 NHLRC4P0CG21 123 aaPredicted RBP4.12□□□□□ -1.75
ATG4A-204ENST00000372246 EDN2P20800 178 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 ZNF672Q499Z4 452 aaPredicted RBP4.12□□□□□ -1.75
ATG4A-204ENST00000372246 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 MRAPQ8TCY5 172 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 C20orf173Q96LM9 149 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 CUL9Q8IWT3 2517 aa4.12□□□□□ -1.75
ATG4A-204ENST00000372246 A0A087WWL8 130 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 SHISA9B4DS77 424 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 F8VRH5 84 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 CRYGDP07320 174 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 C15orf32Q32M92 178 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 C2orf66Q6UXQ4 117 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 LYPD1Q8N2G4 141 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 ANAPC13Q9BS18 74 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 PPDPFQ9H3Y8 114 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 C9JAW5 83 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 LY6LH3BQJ8 138 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 H7C1H1 209 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 TSHBP01222 138 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 IGHV4-39P01824 125 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 CFC1BP0CG36 223 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 CFC1P0CG37 223 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 SCGB1C2P0DMR2 95 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 RPL7P18124 248 aaKnown RBP4.11□□□□□ -1.75
ATG4A-204ENST00000372246 CDSNQ15517 529 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 LRRC75A-AS1Q8N1F1 130 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 NEXN-AS1Q8NBZ9 246 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 DLX4Q92988 240 aaPredicted RBP4.11□□□□□ -1.75
ATG4A-204ENST00000372246 SMIM2Q9BVW6 85 aa4.11□□□□□ -1.75
ATG4A-204ENST00000372246 UTP20O75691 2785 aaKnown RBP4.1□□□□□ -1.75
ATG4A-204ENST00000372246 TEX49A0A1B0GTD5 131 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 A8MZ25 164 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 TRBV12-3P01733 135 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 CD7P09564 240 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 RNASE13Q5GAN3 156 aaKnown RBP4.1□□□□□ -1.75
ATG4A-204ENST00000372246 TMEM170BQ5T4T1 132 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 TMEM219Q86XT9 240 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 NDUFA11Q86Y39 141 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 NUP37Q8NFH4 326 aa4.1□□□□□ -1.75
ATG4A-204ENST00000372246 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms