RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ATP6V0E2Q8NHE4 81 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 PHLDA1Q8WV24 401 aaPredicted RBP6.73□□□□□ -1.33
UPF2-202ENST00000357604 OVOL2Q9BRP0 275 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 I3L3M4 83 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 LINC00479Q96M42 142 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 DERL1Q9BUN8 251 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 AP5S1Q9NUS5 200 aa6.73□□□□□ -1.33
UPF2-202ENST00000357604 CARHSP1Q9Y2V2 147 aaKnown RBP6.73□□□□□ -1.33
UPF2-202ENST00000357604 MALP21145 153 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 HERVK_113P61574 105 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 MUC7Q8TAX7 377 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 PACRGQ96M98 296 aaPredicted RBP6.72□□□□□ -1.33
UPF2-202ENST00000357604 NCR2O95944 276 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 NTF3P20783 257 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 TMEM243Q9BU79 118 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 NXT2Q9NPJ8 142 aaKnown RBP6.72□□□□□ -1.33
UPF2-202ENST00000357604 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.72□□□□□ -1.333e-8■■■■■ 40.2
UPF2-202ENST00000357604 RS1O15537 224 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 NANOS2P60321 138 aaKnown RBP6.72□□□□□ -1.33
UPF2-202ENST00000357604 OR5A1Q8NGJ0 315 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 PTH2Q96A98 100 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 TRBV10-1A0A0K0K1A3 114 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 IFI27P40305 119 aaPredicted RBP6.72□□□□□ -1.33
UPF2-202ENST00000357604 LYPD6BQ8NI32 183 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 TMEM242Q9NWH2 141 aa6.72□□□□□ -1.33
UPF2-202ENST00000357604 SPTAN1Q13813 2472 aaKnown RBP6.72□□□□□ -1.33
UPF2-202ENST00000357604 TRIOO75962 3097 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 OR5AL1P0C617 328 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 CFAP161Q6P656 301 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 ZNRF2Q8NHG8 242 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 HSPB8Q9UJY1 196 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 WNK2Q9Y3S1 2297 aa6.71□□□□□ -1.33
UPF2-202ENST00000357604 SS18Q15532 418 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 MUC21A0A0G2JKD1 596 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 MUC21A0A140T8X8 626 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 CEMP1Q6PRD7 247 aaPredicted RBP6.71□□□□□ -1.34
UPF2-202ENST00000357604 COX11Q9Y6N1 276 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 PRSS2P07478 247 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 TMEM136Q6ZRR5 245 aa6.71□□□□□ -1.34
UPF2-202ENST00000357604 LOC389332A0A1B0GUA5 103 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 GZMBP10144 247 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 H3BRM9 83 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 HSBP1O75506 76 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 DEFB1P60022 68 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 Q0VG73 95 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 ZFAND2AQ8N6M9 145 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 MRPL18Q9H0U6 180 aaKnown RBP6.7□□□□□ -1.34
UPF2-202ENST00000357604 DKK2Q9UBU2 259 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 NAV3Q8IVL0 2385 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 APOMO95445 188 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 LY6G6CO95867 125 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 TM2D3Q9BRN9 247 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 TRBV6-4A0A1B0GX49 114 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 TDRG1Q3Y452 100 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 TMEM191AQ9H0A3 160 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 NIT2Q9NQR4 276 aa6.7□□□□□ -1.34
UPF2-202ENST00000357604 C14orf177Q52M58 125 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 NUP35Q8NFH5 326 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 GNB1LQ9BYB4 327 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 UBR5O95071 2799 aaPredicted RBP6.69□□□□□ -1.34
UPF2-202ENST00000357604 DSCAML1Q8TD84 2053 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 USP9YO00507 2555 aaPredicted RBP6.69□□□□□ -1.34
UPF2-202ENST00000357604 HELZ2Q9BYK8 2649 aaKnown RBP6.69□□□□□ -1.34
UPF2-202ENST00000357604 TRAV26-1A0A087WT03 109 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 DNLZQ5SXM8 178 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 SLC7A5P1Q8MH63 180 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 SMIM27A0A1W2PRY6 76 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 S100A12P80511 92 aa6.69□□□□□ -1.34
UPF2-202ENST00000357604 CYSLTR1Q9Y271 337 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 Q6ZTI0 123 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 FASNP49327 2511 aaKnown RBP6.68□□□□□ -1.34
UPF2-202ENST00000357604 LRRK2Q5S007 2527 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 PGPEP1LA6NFU8 196 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 PHOX2AO14813 284 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 SEC11AP67812 179 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 GEMIN7Q9H840 131 aaKnown RBP6.68□□□□□ -1.34
UPF2-202ENST00000357604 C20orf78Q9BR46 151 aa6.68□□□□□ -1.34
UPF2-202ENST00000357604 ZNF705AQ6ZN79 300 aaPredicted RBP6.67□□□□□ -1.34
UPF2-202ENST00000357604 DPH3Q96FX2 82 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 MED13LQ71F56 2210 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 TRBV7-3A0A075B6L6 115 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 TGIF2-C20orf24A0A0A6YYL0 155 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 H7C423 109 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 ATP5LO75964 103 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 C1orf158Q8N1D5 194 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 MDFICQ9P1T7 246 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 IGKV3OR2-268A0A0C4DH90 116 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 LAGE3Q14657 143 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 TMEM88Q6PEY1 159 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 GTSF1LQ9H1H1 148 aa6.67□□□□□ -1.34
UPF2-202ENST00000357604 IGHV4-4A0A075B6R2 117 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 PRSS1P07477 247 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 OR10AG1Q8NH19 301 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 MAP1LC3CQ9BXW4 147 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 NXPH4O95158 308 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 K7EMI3 77 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 CTRLP40313 264 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 TP53TG3Q9ULZ0 132 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 BAHCC1Q9P281 2608 aa6.66□□□□□ -1.34
UPF2-202ENST00000357604 C9orf85Q96MD7 179 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms