RNA–Protein interactions for RNA: ENST00000357207.8

TRAPPC11-202, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,435 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-202ENST00000357207 NCKAP5O14513 1909 aa12.18□□□□□ -0.46
TRAPPC11-202ENST00000357207 IGHV3-38A0A0C4DH36 116 aa12.18□□□□□ -0.46
TRAPPC11-202ENST00000357207 MYO18BQ8IUG5 2567 aa12.18□□□□□ -0.46
TRAPPC11-202ENST00000357207 TCTEX1D4Q5JR98 221 aa12.18□□□□□ -0.46
TRAPPC11-202ENST00000357207 ADAMTS9Q9P2N4 1935 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 A0A1B0GXF2 115 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 SOCS3O14543 225 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 RHOHQ15669 191 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 RPL39LQ96EH5 51 aaKnown RBP12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 BUB3O43684 328 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 IGLV2-23P01705 113 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 SS18Q15532 418 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 IGFBPL1Q8WX77 278 aa12.17□□□□□ -0.46
TRAPPC11-202ENST00000357207 IGHV7-81A0A0B4J1V7 117 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 GAGE7O76087 117 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 GAGE12FP0CL80 117 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 GAGE12GP0CL81 117 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 GAGE12IP0CL82 117 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 GATA3P23771 443 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 NSUN5P1Q3KNT7 163 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 LINC01356Q8N9X3 169 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 C15orf53Q8NAA6 179 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 CRYGCP07315 174 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 UTF1Q5T230 341 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 PFN2P35080 140 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 MSMPQ1L6U9 139 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 SPATA12Q7Z6I5 190 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 NPBQ8NG41 125 aa12.16□□□□□ -0.46
TRAPPC11-202ENST00000357207 CUL9Q8IWT3 2517 aa12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 TEX22C9J3V5 150 aa12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 IGLV1-47P01700 117 aa12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 SONP18583 2426 aaKnown RBP12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 DEFB130BP0DP73 79 aa12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 DEFB130AP0DP74 79 aa12.15□□□□□ -0.46
TRAPPC11-202ENST00000357207 COL4A4P53420 1690 aaPredicted RBP12.15□□□□□ -0.47
TRAPPC11-202ENST00000357207 CGB3P0DN86 165 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 CGB7P0DN87 165 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 CTRLP40313 264 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 RNASE13Q5GAN3 156 aaKnown RBP12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 IGKV1D-37A0A075B6S9 117 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 TRBV6-1A0A0K0K1D8 114 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 WI2-2373I1.2A0A1W2PRP0 233 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 PRAC2D3DTV9 90 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 ODF1Q14990 250 aa12.14□□□□□ -0.47
TRAPPC11-202ENST00000357207 CENPVL3A0A0U1RRI6 287 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 GDF5OSQ5U4N7 250 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 LINC00322Q6ZN03 302 aaPredicted RBP12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 SPANXDQ9BXN6 97 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 SPRY4Q9C004 299 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 KIAA1549LQ6ZVL6 1849 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 TMEM243Q9BU79 118 aa12.13□□□□□ -0.47
TRAPPC11-202ENST00000357207 TEN1Q86WV5 123 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 C2orf16Q68DN1 1984 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 PIP4P1Q86T03 277 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 TP53TG3Q9ULZ0 132 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 H3BUA1 57 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 HERVK_113P63121 156 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 MBD6Q96DN6 1003 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 A4D1N5 150 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 B5MCH6 92 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 HOXB4P17483 251 aaPredicted RBP12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 GAGE6Q13070 117 aa12.12□□□□□ -0.47
TRAPPC11-202ENST00000357207 ANKRD29Q8N6D5 301 aa12.11□□□□□ -0.47
TRAPPC11-202ENST00000357207 MLST8Q9BVC4 326 aa12.11□□□□□ -0.47
TRAPPC11-202ENST00000357207 ZFP2Q6ZN57 461 aa12.11□□□□□ -0.47
TRAPPC11-202ENST00000357207 SEM1Q6ZVN7 128 aa12.11□□□□□ -0.47
TRAPPC11-202ENST00000357207 TRAV12-1A0A0B4J245 112 aa12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 A0A0J9YXV3 536 aa12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 LOXL1Q08397 574 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 LINC01619G3V211 115 aa12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 G3V4G9 280 aa12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 CFHR3Q02985 330 aa12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 GRNP28799 593 aaKnown RBP12.1□□□□□ -0.47
TRAPPC11-202ENST00000357207 TRAV13-2A0A0B4J235 113 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 SORL1Q92673 2214 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 IGHG4P01861 327 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 SUMO4Q6EEV6 95 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 E9PLD3 99 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 EIF4EBP1Q13541 118 aaPredicted RBP12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 TECTAO75443 2155 aa12.09□□□□□ -0.47
TRAPPC11-202ENST00000357207 MYO9AB2RTY4 2548 aa12.08□□□□□ -0.47
TRAPPC11-202ENST00000357207 Q8N9W7 124 aa12.08□□□□□ -0.47
TRAPPC11-202ENST00000357207 WISP2O76076 250 aa12.08□□□□□ -0.48
TRAPPC11-202ENST00000357207 ELANEP08246 267 aa12.08□□□□□ -0.48
TRAPPC11-202ENST00000357207 C16orf54Q6UWD8 224 aa12.08□□□□□ -0.48
TRAPPC11-202ENST00000357207 UBL5Q9BZL1 73 aa12.08□□□□□ -0.48
TRAPPC11-202ENST00000357207 A0A1W2PNU3 283 aaPredicted RBP12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 RNF223E7ERA6 249 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 MUSTN1Q8IVN3 82 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 MAPK1IP1LQ8NDC0 245 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 TMEM131Q92545 1883 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 NXPH4O95158 308 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 Q9H8V8 135 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 FOXI1Q12951 378 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 C9orf47Q6ZRZ4 202 aa12.07□□□□□ -0.48
TRAPPC11-202ENST00000357207 CRYBA4P53673 196 aa12.06□□□□□ -0.48
TRAPPC11-202ENST00000357207 FANCD2OSQ96PS1 177 aa12.06□□□□□ -0.48
TRAPPC11-202ENST00000357207 LINC00574Q9H8X3 128 aa12.06□□□□□ -0.48
TRAPPC11-202ENST00000357207 RPL39P62891 51 aaKnown RBP12.06□□□□□ -0.48
TRAPPC11-202ENST00000357207 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms