RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 INSP01308 110 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 APCSP02743 223 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 AMBPP02760 352 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 HTN1P15515 57 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 RPL35AP18077 110 aaKnown RBP12.76□□□□□ -0.37
CLDN4-201ENST00000340958 CLUHP3Q96NS8 147 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 A0A1B0GXF2 115 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 CTRLP40313 264 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 PKIAP61925 76 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 JOSD1Q15040 202 aaPredicted RBP12.76□□□□□ -0.37
CLDN4-201ENST00000340958 SSBP4Q9BWG4 385 aaPredicted RBP12.76□□□□□ -0.37
CLDN4-201ENST00000340958 XCL2Q9UBD3 114 aa12.76□□□□□ -0.37
CLDN4-201ENST00000340958 IGHV1OR15-1A0A075B7D0 117 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 DEFA6Q01524 100 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 SPANXN1Q5VSR9 72 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 DEFB125Q8N687 156 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 TMEM208Q9BTX3 173 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 C19orf73Q9NVV2 129 aa12.75□□□□□ -0.37
CLDN4-201ENST00000340958 CBY3A6NI87 242 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 NTF3P20783 257 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 ZNF575Q86XF7 245 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 PHLDA3Q9Y5J5 127 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 CRXO43186 299 aaPredicted RBP12.74□□□□□ -0.37
CLDN4-201ENST00000340958 C14orf144Q96I85 54 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 LINC01587Q99440 93 aa12.74□□□□□ -0.37
CLDN4-201ENST00000340958 OR5AL1P0C617 328 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 CACNG7P62955 275 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 KIAA1644Q3SXP7 199 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 SMIM15Q7Z3B0 74 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 OR10AG1Q8NH19 301 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 TP53TG3Q9ULZ0 132 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 NOTCH1P46531 2555 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 TRGV11A0A075B6L2 103 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 IGHV3OR16-12A0A075B7B8 117 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 M0R381 172 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 DDTP30046 118 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 TDRG1Q3Y452 100 aa12.72□□□□□ -0.37
CLDN4-201ENST00000340958 TSTD3H0UI37 97 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 SNAI2O43623 268 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 RBMY1A1P0DJD3 496 aaKnown RBP12.71□□□□□ -0.38
CLDN4-201ENST00000340958 RBMY1CP0DJD4 496 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 SLAQ13239 276 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 RBMY1FQ15415 496 aaKnown RBP12.71□□□□□ -0.38
CLDN4-201ENST00000340958 Q8N1Y9 231 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 C20orf144Q9BQM9 153 aa12.71□□□□□ -0.38
CLDN4-201ENST00000340958 MED14OSP0DP75 135 aa12.7□□□□□ -0.38
CLDN4-201ENST00000340958 MORN3Q6PF18 240 aaPredicted RBP12.7□□□□□ -0.38
CLDN4-201ENST00000340958 C1QTNF4Q9BXJ3 329 aa12.7□□□□□ -0.38
CLDN4-201ENST00000340958 CNFNQ9BYD5 112 aa12.7□□□□□ -0.38
CLDN4-201ENST00000340958 MSRB1Q9NZV6 116 aa12.7□□□□□ -0.38
CLDN4-201ENST00000340958 NOTCH3Q9UM47 2321 aa12.7□□□□□ -0.38
CLDN4-201ENST00000340958 OXLD1Q5BKU9 147 aa12.69□□□□□ -0.38
CLDN4-201ENST00000340958 PRO1933Q9H354 126 aa12.69□□□□□ -0.38
CLDN4-201ENST00000340958 MEGF8Q7Z7M0 2845 aa12.69□□□□□ -0.38
CLDN4-201ENST00000340958 SPRY2O43597 315 aa12.69□□□□□ -0.38
CLDN4-201ENST00000340958 RNASE3P12724 160 aaKnown RBP12.69□□□□□ -0.38
CLDN4-201ENST00000340958 MDFICQ9P1T7 246 aa12.69□□□□□ -0.38
CLDN4-201ENST00000340958 IGHV3-16A0A0C4DH30 117 aa12.68□□□□□ -0.38
CLDN4-201ENST00000340958 WIPF1O43516 503 aa12.68□□□□□ -0.38
CLDN4-201ENST00000340958 LBHQ53QV2 105 aaPredicted RBP12.68□□□□□ -0.38
CLDN4-201ENST00000340958 GOLT1BQ9Y3E0 138 aa12.68□□□□□ -0.38
CLDN4-201ENST00000340958 SRIP30626 198 aa12.67□□□□□ -0.38
CLDN4-201ENST00000340958 ZNF493Q6ZR52 646 aa12.67□□□□□ -0.38
CLDN4-201ENST00000340958 TMEM256Q8N2U0 113 aa12.67□□□□□ -0.38
CLDN4-201ENST00000340958 TMEM18Q96B42 140 aa12.67□□□□□ -0.38
CLDN4-201ENST00000340958 AMN1Q8IY45 258 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 ZNF664Q8N3J9 261 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 SYT8Q8NBV8 401 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 TMEM191AQ9H0A3 160 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 CSTL1Q9H114 145 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 SCRT2Q9NQ03 307 aa12.66□□□□□ -0.38
CLDN4-201ENST00000340958 IGHV4-4A0A075B6R2 117 aa12.65□□□□□ -0.38
CLDN4-201ENST00000340958 LOC102724200A0A096LPH7 203 aaPredicted RBP12.65□□□□□ -0.38
CLDN4-201ENST00000340958 GATD1Q8NB37 220 aa12.65□□□□□ -0.38
CLDN4-201ENST00000340958 EVI2AP22794 236 aa12.65□□□□□ -0.39
CLDN4-201ENST00000340958 ZNF415Q09FC8 603 aa12.65□□□□□ -0.39
CLDN4-201ENST00000340958 DMRTA1Q5VZB9 504 aa12.65□□□□□ -0.39
CLDN4-201ENST00000340958 FAM104BQ5XKR9 115 aa12.65□□□□□ -0.39
CLDN4-201ENST00000340958 C1orf158Q8N1D5 194 aa12.65□□□□□ -0.39
CLDN4-201ENST00000340958 PRM2P04554 102 aa12.64□□□□□ -0.39
CLDN4-201ENST00000340958 SMIM17P0DL12 118 aa12.64□□□□□ -0.39
CLDN4-201ENST00000340958 BAGE3Q86Y29 109 aa12.64□□□□□ -0.39
CLDN4-201ENST00000340958 C9orf85Q96MD7 179 aa12.64□□□□□ -0.39
CLDN4-201ENST00000340958 AP1S3Q96PC3 154 aa12.63□□□□□ -0.39
CLDN4-201ENST00000340958 RCHY1Q96PM5 261 aa12.63□□□□□ -0.39
CLDN4-201ENST00000340958 LINC00467Q9BRT7 94 aa12.63□□□□□ -0.39
CLDN4-201ENST00000340958 G3V4G9 280 aa12.62□□□□□ -0.39
CLDN4-201ENST00000340958 GIG44P09565 113 aaPredicted RBP12.62□□□□□ -0.39
CLDN4-201ENST00000340958 CKS2P33552 79 aa12.62□□□□□ -0.39
CLDN4-201ENST00000340958 C14orf178Q8N769 122 aaPredicted RBP12.62□□□□□ -0.39
CLDN4-201ENST00000340958 ALKBH7Q9BT30 221 aaPredicted RBP12.62□□□□□ -0.39
CLDN4-201ENST00000340958 APOC4P55056 127 aa12.61□□□□□ -0.39
CLDN4-201ENST00000340958 ZNF876PQ49A33 203 aa12.61□□□□□ -0.39
CLDN4-201ENST00000340958 NDUFAF3Q9BU61 184 aa12.61□□□□□ -0.39
CLDN4-201ENST00000340958 D6R8Y8 96 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 MGPP08493 103 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 RAB4AP20338 218 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 IQCJQ1A5X6 159 aa12.6□□□□□ -0.39
CLDN4-201ENST00000340958 MRPL51Q4U2R6 128 aaKnown RBP12.6□□□□□ -0.39
CLDN4-201ENST00000340958 ORMDL3Q8N138 153 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms