RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 MIFP14174 115 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 FAM208BQ5VWN6 2430 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 TRBV6-1A0A0K0K1D8 114 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 NCOA6Q14686 2063 aaPredicted RBP7.7□□□□□ -1.18
USP54-201ENST00000339859 TRAV26-2A0A0B4J265 109 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 Q8N1Y9 231 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 IGHV3-64A0A075B6Q5 118 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 PIEZO1Q92508 2521 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 PRAC2D3DTV9 90 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 DEFB4AO15263 64 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 TM2D2Q9BX73 214 aa7.7□□□□□ -1.18
USP54-201ENST00000339859 IGKV1OR2-108A0A075B7D4 117 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 TRAV4A0A0B4J268 109 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 CRIP2P52943 208 aaPredicted RBP7.69□□□□□ -1.18
USP54-201ENST00000339859 NDUFAF3Q9BU61 184 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 GOLGB1Q14789 3259 aaKnown RBP7.69□□□□□ -1.18
USP54-201ENST00000339859 MYMXA0A1B0GTQ4 84 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 ZNF25P17030 456 aaPredicted RBP7.69□□□□□ -1.18
USP54-201ENST00000339859 Q6ZS46 218 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 C18orf65Q6ZTR6 163 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 C1orf43Q9BWL3 253 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 ZFAND3Q9H8U3 227 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 WNK2Q9Y3S1 2297 aa7.69□□□□□ -1.18
USP54-201ENST00000339859 CXCL1P09341 107 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 RPL24P83731 157 aaKnown RBP7.68□□□□□ -1.18
USP54-201ENST00000339859 TIMM21Q9BVV7 248 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 LOC107984156A0A0G2JMH3 177 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 ARL17AQ8IVW1 177 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 ZNF815PA8K554 130 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 H3BMM0 161 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 Q6ZQT7 251 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 KIR2DL5BA0A0G2JN68 375 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 KIR2DL5BA0A0G2JPC4 375 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 TMEM238C9JI98 176 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 KIR2DL5AQ8N109 375 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 KIR2DL5BQ8NHK3 375 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 C11orf1Q9H5F2 150 aa7.68□□□□□ -1.18
USP54-201ENST00000339859 NEGR1Q7Z3B1 354 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 C2orf66Q6UXQ4 117 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 LBHQ53QV2 105 aaPredicted RBP7.67□□□□□ -1.18
USP54-201ENST00000339859 ATRAIDQ6UW56 229 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 PCSK5Q92824 1860 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 K7EMI3 77 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 LINC00482Q8N8I6 264 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 ZNF503Q96F45 646 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 SMIM2Q9BVW6 85 aa7.67□□□□□ -1.18
USP54-201ENST00000339859 Q9HAA7 133 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 HIVEP2P31629 2446 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 PMVKQ15126 192 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 PRO0255Q9UI72 69 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 HERVK_113P63121 156 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 SUMO4Q6EEV6 95 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 RNF183Q96D59 192 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 SMIM13P0DJ93 91 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 BRI3O95415 125 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 IGHV3-30P01768 117 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 IGHV3-33P01772 117 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 IGHV3-30-3P0DP02 117 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 IGHV3-30-5P0DP03 117 aa7.66□□□□□ -1.18
USP54-201ENST00000339859 Q6ZWC4 215 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 K7EN84 100 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 UBE2WQ96B02 151 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 TRAV10A0A0B4J240 114 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 FABP2P12104 132 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 HIST2H2BDQ6DRA6 164 aa7.65□□□□□ -1.18
USP54-201ENST00000339859 JPT2Q9H910 190 aa7.65□□□□□ -1.19
USP54-201ENST00000339859 LURAP1LQ8IV03 231 aa7.65□□□□□ -1.19
USP54-201ENST00000339859 KLF12Q9Y4X4 402 aa7.65□□□□□ -1.19
USP54-201ENST00000339859 NCOR2Q9Y618 2525 aa7.65□□□□□ -1.19
USP54-201ENST00000339859 NKAPP1Q8N9T2 125 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 CST9LQ9H4G1 147 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 DEFB131BA0A096LNP1 70 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 CLPSL2Q6UWE3 100 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 PRIMA1Q86XR5 153 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BKO60814 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BJP06899 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BOP23527 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BBP33778 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BDP58876 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BCP62807 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST2H2BEQ16778 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BHQ93079 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BNQ99877 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 HIST1H2BMQ99879 126 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 FAM110AQ9BQ89 295 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 ESM1Q9NQ30 184 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 ANKHD1Q8IWZ3 2542 aaKnown RBP7.64□□□□□ -1.19
USP54-201ENST00000339859 TRBV7-3A0A075B6L6 115 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 LYPD6BQ8NI32 183 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 SPANXA1Q9NS26 97 aa7.64□□□□□ -1.19
USP54-201ENST00000339859 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.63□□□□□ -1.19
USP54-201ENST00000339859 LEPROTO15243 131 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 DEFB1P60022 68 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 OXLD1Q5BKU9 147 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 FAM222AQ5U5X8 452 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 C15orf53Q8NAA6 179 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 CHAC1Q9BUX1 264 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 AKAP6Q13023 2319 aa7.63□□□□□ -1.19
USP54-201ENST00000339859 C20orf173Q96LM9 149 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms