RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 FOXI2Q6ZQN5 318 aa2.63□□□□□ -1.99
CSMD3-202ENST00000339701 Q8TCH9 128 aa2.63□□□□□ -1.99
CSMD3-202ENST00000339701 TGFBR3LH3BV60 316 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 PIGYQ3MUY2 71 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 GPHB5Q86YW7 130 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 UBE2D4Q9Y2X8 147 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 F8W735 103 aaPredicted RBP2.62□□□□□ -1.99
CSMD3-202ENST00000339701 FOXL2NBQ6ZUU3 175 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 SHANK2-AS3Q9BTD1 123 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 PPDPFQ9H3Y8 114 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 SPINK4O60575 86 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 UBE2D2P62837 147 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 MORN5Q5VZ52 161 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 C2orf66Q6UXQ4 117 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 NABP1Q96AH0 204 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 MYCNOSP40205 109 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 LINC00482Q8N8I6 264 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 TMEM178BH3BS89 294 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 COX17Q14061 63 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 TP73-AS1Q9UF72 201 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CEP295Q9C0D2 2601 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 J3QRE1 110 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 NXPH3O95157 252 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CGAP01215 116 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 P0C879 139 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 DEFB130BP0DP73 79 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 DEFB130AP0DP74 79 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CHCHD7Q9BUK0 85 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CHCHD2Q9Y6H1 151 aaPredicted RBP2.62□□□□□ -1.99
CSMD3-202ENST00000339701 IGHV1-3A0A0C4DH29 117 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CD55P08174 381 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 SMIM27A0A1W2PRY6 76 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 PROP1O75360 226 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 COL8A2P25067 703 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 FBXL19-AS1Q494R0 122 aa2.62□□□□□ -1.99
CSMD3-202ENST00000339701 CENPVL3A0A0U1RRI6 287 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 HIGD2AQ9BW72 106 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 CSTL1Q9H114 145 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 CHKB-CPT1BH3BT56 60 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 CFC1BP0CG36 223 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 CFC1P0CG37 223 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 CEND1Q8N111 149 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 RPP25LQ8N5L8 163 aaKnown RBP2.61□□□□□ -1.99
CSMD3-202ENST00000339701 C14orf144Q96I85 54 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 YPEL4Q96NS1 127 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 FANCD2OSQ96PS1 177 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 ZNF706Q9Y5V0 76 aaPredicted RBP2.61□□□□□ -1.99
CSMD3-202ENST00000339701 IGKV1-8A0A0C4DH67 115 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 E7EQL1 145 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 IGHV2-5P01817 119 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 SAA1P0DJI8 122 aaPredicted RBP2.61□□□□□ -1.99
CSMD3-202ENST00000339701 Q6ZSR3 168 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 MDS2Q8NDY4 140 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 MBD6Q96DN6 1003 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 VSIRQ9H7M9 311 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 RPL37AP8A6NKH3 93 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 LINC00173Q6ZV60 143 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 MLST8Q9BVC4 326 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 MRPL36Q9P0J6 103 aaKnown RBP2.61□□□□□ -1.99
CSMD3-202ENST00000339701 TOMM7Q9P0U1 55 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 IGHV1-18A0A0C4DH31 117 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 J3QQQ9 107 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 K7EMT4 169 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 SUMO4Q6EEV6 95 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 C5orf24Q7Z6I8 188 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 FXYD5Q96DB9 178 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 TRBV10-3A0A0K0K1G6 114 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 FGF6P10767 208 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 ADMP35318 185 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 RNF126Q9BV68 326 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 USP34Q70CQ2 3546 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 COX7A2LO14548 114 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 SPRY2O43597 315 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 MUSTN1Q8IVN3 82 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 NDUFA4L2Q9NRX3 87 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 COL27A1Q8IZC6 1860 aaPredicted RBP2.61□□□□□ -1.99
CSMD3-202ENST00000339701 TRGV1A0A0A0MS02 117 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 D6R8Y8 96 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 ZNF876PQ49A33 203 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 LINC00474Q9P2X8 69 aa2.61□□□□□ -1.99
CSMD3-202ENST00000339701 C1QL2Q7Z5L3 287 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 OCC1Q8TAD7 63 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 C18orf32Q8TCD1 76 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 TRBV19A0A075B6N1 114 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 ADORA2A-AS1P86434 159 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 NREPQ16612 68 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 IGKV2D-24A0A075B6R9 120 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 SRRM4A7MD48 611 aaKnown RBP2.6□□□□□ -1.99
CSMD3-202ENST00000339701 RNASE1P07998 156 aaKnown RBP2.6□□□□□ -1.99
CSMD3-202ENST00000339701 FLVCR1-AS1Q8TAF5 88 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 SPRY4Q9C004 299 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 FXYD7P58549 80 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 C15orf32Q32M92 178 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 Q86TA4 180 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 AJUBAQ96IF1 538 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 TRAV26-2A0A0B4J265 109 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 LYNX1G3V0Z9 82 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.6□□□□□ -1.99
CSMD3-202ENST00000339701 C3orf79P0CE67 100 aa2.6□□□□□ -1.99
CSMD3-202ENST00000339701 LYNX1P0DP58 116 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms