RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 IGKV3-20P01619 116 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 PRSS1P07477 247 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 SMIM17P0DL12 118 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 FGF6P10767 208 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 GAGE1Q13065 139 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 LAGE3Q14657 143 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 BVES-AS1Q5T3Y7 98 aa11.13□□□□□ -0.63
CLCNKA-201ENST00000331433 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 MGPP08493 103 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 ODF1Q14990 250 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 RPL39LQ96EH5 51 aaKnown RBP11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 DPH3P1Q9H4G8 78 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 CCDC168Q8NDH2 2452 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 TRAV12-3A0A0B4J271 114 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 HOXD3P31249 432 aaPredicted RBP11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 DEFB125Q8N687 156 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 RASL10AQ92737 203 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 ITPR3Q14573 2671 aa11.12□□□□□ -0.63
CLCNKA-201ENST00000331433 ELANEP08246 267 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 MYOZ3Q8TDC0 251 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 DPF1Q92782 380 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 FOXC2Q99958 501 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 SMIM2Q9BVW6 85 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 MED14OSP0DP75 135 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 SAMD13Q5VXD3 122 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 FAM159AQ6UWV7 190 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 C18orf65Q6ZTR6 163 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 OR1N2Q8NGR9 330 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 COX11Q9Y6N1 276 aa11.11□□□□□ -0.63
CLCNKA-201ENST00000331433 TRAV12-2A0A075B6T6 113 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 NMUP48645 174 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 DEFB136Q30KP8 78 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 GCN1Q92616 2671 aaKnown RBP11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 K7EQG2 157 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 SNRPD3P62318 126 aaKnown RBP11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 C12orf54Q6X4T0 127 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 UBE2E2Q96LR5 201 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 AP1S3Q96PC3 154 aa11.1□□□□□ -0.63
CLCNKA-201ENST00000331433 SUMO2P61956 95 aaKnown RBP11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 PCP2Q8IVA1 136 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 A0A0J9YX75 114 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 CD7P09564 240 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 ERASQ7Z444 233 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 BOD1L2Q8IYS8 172 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 JPT2Q9H910 190 aa11.09□□□□□ -0.63
CLCNKA-201ENST00000331433 KRTAP1-3Q8IUG1 177 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 ORAOV1Q8WV07 137 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 ZMAT4Q9H898 229 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 C7orf71A4D174 169 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 ATP5LO75964 103 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 LRRC75A-AS1Q8N1F1 130 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 HHLA3Q9XRX5 114 aa11.08□□□□□ -0.64
CLCNKA-201ENST00000331433 AKAP9Q99996 3911 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 LGALS9O00182 355 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 SLURP1P55000 103 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 IGKV2D-26A0A0A0MRZ7 120 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 NXPH4O95158 308 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 IGKCP01834 107 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 ZNF124Q15973 351 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 HIST2H2BDQ6DRA6 164 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 ADAMTSL5Q6ZMM2 481 aa11.07□□□□□ -0.64
CLCNKA-201ENST00000331433 TAX1BP3O14907 124 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 SPINK13Q1W4C9 94 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 RNF152Q8N8N0 203 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 C20orf78Q9BR46 151 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 MRPL35Q9NZE8 188 aaKnown RBP11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 FLNAP21333 2647 aaKnown RBP11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 NF1P21359 2839 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 LINC00315P59091 139 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 TCTEX1D4Q5JR98 221 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 TTTY13Q9BZ97 58 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 KIF25-AS1Q9Y6Z4 181 aa11.06□□□□□ -0.64
CLCNKA-201ENST00000331433 A0A087WWL8 130 aa11.05□□□□□ -0.64
CLCNKA-201ENST00000331433 DPM2O94777 84 aa11.05□□□□□ -0.64
CLCNKA-201ENST00000331433 NEGR1Q7Z3B1 354 aa11.05□□□□□ -0.64
CLCNKA-201ENST00000331433 DUX3Q96PT4 197 aa11.05□□□□□ -0.64
CLCNKA-201ENST00000331433 TMEM160Q9NX00 188 aa11.05□□□□□ -0.64
CLCNKA-201ENST00000331433 TMEM97Q5BJF2 176 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 GTSCR1Q86UQ5 136 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 ODF3Q96PU9 254 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 MDFICQ9P1T7 246 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 CUBNO60494 3623 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 CDKN1BP46527 198 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 ORMDL2Q53FV1 153 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 ZC2HC1BQ5TFG8 222 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 DEFB104AQ8WTQ1 72 aa11.04□□□□□ -0.64
CLCNKA-201ENST00000331433 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 CCL25O15444 150 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 HIST2H2BCQ6DN03 193 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 CSTL1Q9H114 145 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 IGHV3-16A0A0C4DH30 117 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 CBY3A6NI87 242 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 KHDC1LQ5JSQ8 128 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 Q8N1Y9 231 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 Q8N2B8 174 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 POM121L12Q8N7R1 296 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 WFDC11Q8NEX6 87 aa11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 FASNP49327 2511 aaKnown RBP11.03□□□□□ -0.64
CLCNKA-201ENST00000331433 A0A087WX48 190 aa11.02□□□□□ -0.64
CLCNKA-201ENST00000331433 OR9G4Q8NGQ1 327 aa11.02□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms