RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SIVA1O15304 175 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 ZNF506Q5JVG8 444 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 CST9LP1Q5W188 147 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 SFT2D1Q8WV19 159 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 MBD3L1Q8WWY6 194 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 ZC2HC1AQ96GY0 325 aa11.16□□□□□ -0.62
LSM1-201ENST00000311351 IGHV3-73A0A0B4J1V6 119 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 A0A1W2PPQ1 181 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 TEX46H3BTG2 121 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 RS1O15537 224 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 PAGE4O60829 102 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 ORM1P02763 201 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 H2AFB1P0C5Y9 115 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 GATA1P15976 413 aaPredicted RBP11.15□□□□□ -0.62
LSM1-201ENST00000311351 UBE2G1P62253 170 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 CFAP126Q5VTH2 177 aa11.15□□□□□ -0.62
LSM1-201ENST00000311351 RYR1P21817 5038 aa11.14□□□□□ -0.63
LSM1-201ENST00000311351 CRIP1P50238 77 aa11.14□□□□□ -0.63
LSM1-201ENST00000311351 LINC00315P59091 139 aa11.14□□□□□ -0.63
LSM1-201ENST00000311351 FMC1Q96HJ9 113 aa11.14□□□□□ -0.63
LSM1-201ENST00000311351 FABP5P3A8MUU1 101 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 M0R036 132 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 SH2D1AO60880 128 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 AKR1C3P42330 323 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 WFDC10BQ8IUB3 73 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 NHLRC2Q8NBF2 726 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 TXNDC17Q9BRA2 123 aa11.13□□□□□ -0.63
LSM1-201ENST00000311351 B4DEV8 164 aa11.12□□□□□ -0.63
LSM1-201ENST00000311351 H3BVH4 76 aa11.12□□□□□ -0.63
LSM1-201ENST00000311351 S100A4P26447 101 aaKnown RBP11.12□□□□□ -0.63
LSM1-201ENST00000311351 ASIPP42127 132 aa11.12□□□□□ -0.63
LSM1-201ENST00000311351 SLC25A29Q8N8R3 303 aa11.12□□□□□ -0.63
LSM1-201ENST00000311351 ZFP30Q9Y2G7 519 aa11.12□□□□□ -0.63
LSM1-201ENST00000311351 SCO2A0A1W2PP80 73 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 GRIFINA4D1Z8 144 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 LTAP01374 205 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 SULT1A2P50226 295 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 COX8CQ7Z4L0 72 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 C9orf62Q8N4C0 152 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 PTH2Q96A98 100 aa11.11□□□□□ -0.63
LSM1-201ENST00000311351 LRP1BQ9NZR2 4599 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 PCLOQ9Y6V0 5065 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 TRAV1-1A0A0B4J248 108 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 TRBV6-1A0A0K0K1D8 114 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 KRBOX1C9JBD0 128 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 MED14OSP0DP75 135 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 FAM162BQ5T6X4 162 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 Q6ZRN7 208 aaPredicted RBP11.1□□□□□ -0.63
LSM1-201ENST00000311351 PARLQ9H300 379 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 MANBALQ9NQG1 85 aa11.1□□□□□ -0.63
LSM1-201ENST00000311351 TMSB15BA0A087X1C1 80 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 RHOHQ15669 191 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 JPT2Q9H910 190 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 IL36BQ9NZH7 164 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 TNFRSF18Q9Y5U5 241 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 LY96Q9Y6Y9 160 aa11.09□□□□□ -0.63
LSM1-201ENST00000311351 A0A1B0GVG6 124 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 TRBV6-4A0A1B0GX49 114 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 C16orf90A8MZG2 172 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 S100A9P06702 114 aaKnown RBP11.08□□□□□ -0.64
LSM1-201ENST00000311351 BTF3P20290 206 aaKnown RBP11.08□□□□□ -0.64
LSM1-201ENST00000311351 ZNF674Q2M3X9 581 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 Q6ZSN1 163 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 PRADC1Q9BSG0 188 aa11.08□□□□□ -0.64
LSM1-201ENST00000311351 DNAH5Q8TE73 4624 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 CIDEAO60543 219 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 IFNA1P01562 189 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 ARMS2P0C7Q2 107 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 CCL20P78556 96 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 LINC01559Q495D7 138 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 SPATA12Q7Z6I5 190 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 SAMD10Q9BYL1 202 aa11.07□□□□□ -0.64
LSM1-201ENST00000311351 A8MWV9 139 aa11.06□□□□□ -0.64
LSM1-201ENST00000311351 DNAH10OSP0CZ25 163 aa11.06□□□□□ -0.64
LSM1-201ENST00000311351 MGST1P10620 155 aaKnown RBP11.06□□□□□ -0.64
LSM1-201ENST00000311351 DNLZQ5SXM8 178 aa11.06□□□□□ -0.64
LSM1-201ENST00000311351 SH2D6Q7Z4S9 175 aa11.06□□□□□ -0.64
LSM1-201ENST00000311351 GNG13Q9P2W3 67 aa11.06□□□□□ -0.64
LSM1-201ENST00000311351 TIRAPP58753 221 aa11.05□□□□□ -0.64
LSM1-201ENST00000311351 KRTAP10-2P60368 255 aa11.05□□□□□ -0.64
LSM1-201ENST00000311351 RPL19P84098 196 aaKnown RBP11.05□□□□□ -0.64
LSM1-201ENST00000311351 PIK3CD-AS1Q5SR53 167 aa11.05□□□□□ -0.64
LSM1-201ENST00000311351 ZFP2Q6ZN57 461 aa11.05□□□□□ -0.64
LSM1-201ENST00000311351 HSPG2P98160 4391 aa11.05□□□□□ -0.64
LSM1-201ENST00000311351 M0R381 172 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 EVI2AP22794 236 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 TAGLN2P37802 199 aaKnown RBP11.04□□□□□ -0.64
LSM1-201ENST00000311351 UFSP1Q6NVU6 142 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 BAGE2Q86Y30 109 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 SYT8Q8NBV8 401 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 DERL1Q9BUN8 251 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 SCRT2Q9NQ03 307 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 Q9UF83 564 aa11.04□□□□□ -0.64
LSM1-201ENST00000311351 TRAV9-2A0A087WT02 112 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 GAGE12JA6NER3 117 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 CRYGDP07320 174 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 LINC00694P0DN24 101 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 BLOC1S1P78537 153 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 GAGE1Q13065 139 aa11.03□□□□□ -0.64
LSM1-201ENST00000311351 GAGE4Q13068 117 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms