RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RPL18AQ02543 176 aaKnown RBP10.95□□□□□ -0.66
CSPG4-201ENST00000308508 IGKV2D-24A0A075B6R9 120 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 TMEM61Q8N0U2 210 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 DAZ2Q13117 558 aaKnown RBP10.94□□□□□ -0.66
CSPG4-201ENST00000308508 DAZ4Q86SG3 579 aaKnown RBP10.94□□□□□ -0.66
CSPG4-201ENST00000308508 RNF152Q8N8N0 203 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 DAZ3Q9NR90 486 aaKnown RBP10.94□□□□□ -0.66
CSPG4-201ENST00000308508 NLRC5Q86WI3 1866 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 TRBV10-2A0A0K0K1G8 114 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 H3BT86 120 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 LY6HO94772 140 aa10.94□□□□□ -0.66
CSPG4-201ENST00000308508 ATRXP46100 2492 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 TMEM256-PLSCR3K7ERE1 68 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 A0A096LPF7 62 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 H3BUA1 57 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 Q71RC1 249 aaPredicted RBP10.93□□□□□ -0.66
CSPG4-201ENST00000308508 PRR20EP86478 221 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 PRR20CP86479 221 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 PRR20DP86480 221 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 PRR20BP86481 221 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 PRR20AP86496 221 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 HIST2H2BCQ6DN03 193 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 NOP10Q9NPE3 64 aaKnown RBP10.93□□□□□ -0.66
CSPG4-201ENST00000308508 BRWD3Q6RI45 1802 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 MGAMO43451 1857 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 GNRH2O43555 120 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 TANC2Q9HCD6 1990 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 TMEM131Q92545 1883 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 DKK4Q9UBT3 224 aa10.93□□□□□ -0.66
CSPG4-201ENST00000308508 U3KQE9 123 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 C15orf65H3BRN8 121 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 FOXE3Q13461 319 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 FHL1Q13642 323 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 TRAV26-1A0A087WT03 109 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 ZNF491Q8N8L2 437 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 COL4A5P29400 1685 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 MALRD1Q5VYJ5 2156 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 PDE6GP18545 87 aa10.92□□□□□ -0.66
CSPG4-201ENST00000308508 MRPL36Q9P0J6 103 aaKnown RBP10.92□□□□□ -0.66
CSPG4-201ENST00000308508 C17orf82Q86X59 251 aaPredicted RBP10.91□□□□□ -0.66
CSPG4-201ENST00000308508 ZNF503Q96F45 646 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 FRMPD3Q5JV73 1810 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 FXYD2P54710 66 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 ETV2O00321 342 aaPredicted RBP10.91□□□□□ -0.66
CSPG4-201ENST00000308508 COX7A2LO14548 114 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 WDR86Q86TI4 376 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 C1orf147Q96MC9 270 aaPredicted RBP10.91□□□□□ -0.66
CSPG4-201ENST00000308508 TPSG1Q9NRR2 321 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 IGKV1OR2-108A0A075B7D4 117 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 NBASA2RRP1 2371 aa10.91□□□□□ -0.66
CSPG4-201ENST00000308508 CD59P13987 128 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 C5orf38Q86SI9 138 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 RPL39LQ96EH5 51 aaKnown RBP10.9□□□□□ -0.66
CSPG4-201ENST00000308508 ANKRD39Q53RE8 183 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 SPTSSBQ8NFR3 76 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 MED12LQ86YW9 2145 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 FREM1Q5H8C1 2179 aa10.9□□□□□ -0.66
CSPG4-201ENST00000308508 CAMK2N2Q96S95 79 aa10.9□□□□□ -0.67
CSPG4-201ENST00000308508 J3QLI3 93 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 TMEM105Q8N8V8 129 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 TIRAPP58753 221 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 GNLYP22749 145 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 TDRG1Q3Y452 100 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 K7EQD1 137 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 Q6ZQT7 251 aa10.89□□□□□ -0.67
CSPG4-201ENST00000308508 C17orf77Q96MU5 243 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 LINC00643Q86TS7 51 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 AGPAT4-IT1Q9H0P7 198 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 E9PLD3 99 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 TRBV12-3P01733 135 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 LOXP28300 417 aaPredicted RBP10.88□□□□□ -0.67
CSPG4-201ENST00000308508 C9orf47Q6ZRZ4 202 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 ELANEP08246 267 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 WDR90Q96KV7 1748 aa10.88□□□□□ -0.67
CSPG4-201ENST00000308508 Q6ZS92 163 aa10.87□□□□□ -0.67
CSPG4-201ENST00000308508 Q6ZUT4 128 aa10.87□□□□□ -0.67
CSPG4-201ENST00000308508 KIAA1549Q9HCM3 1950 aa10.87□□□□□ -0.67
CSPG4-201ENST00000308508 TOMM6Q96B49 74 aa10.87□□□□□ -0.67
CSPG4-201ENST00000308508 NDUFV3P56181 108 aaKnown RBP10.87□□□□□ -0.67
CSPG4-201ENST00000308508 RNF223E7ERA6 249 aa10.87□□□□□ -0.67
CSPG4-201ENST00000308508 GATA1P15976 413 aaPredicted RBP10.86□□□□□ -0.67
CSPG4-201ENST00000308508 C16orf74Q96GX8 76 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 ZMAT4Q9H898 229 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 UQCRQO14949 82 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 LECT2O14960 151 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 CXCL5P42830 114 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 C11orf86A6NJI1 115 aa10.86□□□□□ -0.67
CSPG4-201ENST00000308508 HCFC1P51610 2035 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 Q6ZR03 302 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 CLEC2BQ92478 149 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 IGLV3-9A0A075B6K5 115 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 UNQ6494/PRO21346Q6UXR6 183 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 UPK3BQ9BT76 320 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 PIFOQ8TCI5 191 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 FAM240AA0A1B0GVK7 77 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 V9GYY9 64 aa10.85□□□□□ -0.67
CSPG4-201ENST00000308508 A0A0J9YY99 117 aa10.84□□□□□ -0.67
CSPG4-201ENST00000308508 LINC00173Q6ZV60 143 aa10.84□□□□□ -0.67
CSPG4-201ENST00000308508 TIMM17AQ99595 171 aa10.84□□□□□ -0.67
CSPG4-201ENST00000308508 Q9HAA7 133 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms