RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TRAV13-1A0A0B4J241 112 aa15.03■□□□□ -0
USP48-201ENST00000308271 TRGV4A0A0C4DH28 118 aa15.03■□□□□ -0
USP48-201ENST00000308271 B5MCH6 92 aa15.03■□□□□ -0
USP48-201ENST00000308271 PHLDA1Q8WV24 401 aaPredicted RBP15.03■□□□□ -0
USP48-201ENST00000308271 CHCHD5Q9BSY4 110 aa15.03■□□□□ -0
USP48-201ENST00000308271 SPINK13Q1W4C9 94 aa15.03■□□□□ -0
USP48-201ENST00000308271 UTF1Q5T230 341 aa15.03■□□□□ -0
USP48-201ENST00000308271 ATP6V0E2Q8NHE4 81 aa15.02■□□□□ -0
USP48-201ENST00000308271 OTOGLQ3ZCN5 2332 aa15.02■□□□□ -0
USP48-201ENST00000308271 ANKRD29Q8N6D5 301 aa15.02□□□□□ -0.01
USP48-201ENST00000308271 RPL39LQ96EH5 51 aaKnown RBP15.02□□□□□ -0.01
USP48-201ENST00000308271 PIP4P2Q8N4L2 257 aa15.02□□□□□ -0.01
USP48-201ENST00000308271 Q8N976 141 aa15.01□□□□□ -0.01
USP48-201ENST00000308271 GNRH2O43555 120 aa15.01□□□□□ -0.01
USP48-201ENST00000308271 MYCNOSP40205 109 aa15.01□□□□□ -0.01
USP48-201ENST00000308271 ZNF625Q96I27 306 aaPredicted RBP15.01□□□□□ -0.01
USP48-201ENST00000308271 SP5Q6BEB4 398 aaPredicted RBP15.01□□□□□ -0.01
USP48-201ENST00000308271 KLHL30-AS1Q8NEE0 82 aa15.01□□□□□ -0.01
USP48-201ENST00000308271 TRGV1A0A0A0MS02 117 aa15□□□□□ -0.01
USP48-201ENST00000308271 CRYBA4P53673 196 aa15□□□□□ -0.01
USP48-201ENST00000308271 HIST1H4AP62805 103 aaKnown RBP15□□□□□ -0.01
USP48-201ENST00000308271 KLK9Q9UKQ9 250 aa15□□□□□ -0.01
USP48-201ENST00000308271 C10orf142B7Z368 130 aa15□□□□□ -0.01
USP48-201ENST00000308271 ATG2AQ2TAZ0 1938 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 IGHV7-81A0A0B4J1V7 117 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 INSP01308 110 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 KNCNA6PVL3 124 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 PRAC2D3DTV9 90 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 TOMM6Q96B49 74 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 SPAG8Q99932 426 aaPredicted RBP14.99□□□□□ -0.01
USP48-201ENST00000308271 TM2D2Q9BX73 214 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 IGHG4P01861 327 aa14.99□□□□□ -0.01
USP48-201ENST00000308271 IGHV7-4-1A0A0J9YVY3 117 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 A4D1N5 150 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 B4DSR2 109 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 IGHV1-69P01742 117 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 PRR30Q53SZ7 412 aaPredicted RBP14.98□□□□□ -0.01
USP48-201ENST00000308271 SEM1Q6ZVN7 128 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 HCFC1P51610 2035 aa14.98□□□□□ -0.01
USP48-201ENST00000308271 SYNJ2BPP57105 145 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 RUSC1-AS1Q66K80 236 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 DNAJC30Q96LL9 226 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 ZFP2Q6ZN57 461 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 MSRB2Q9Y3D2 182 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 PLXNB1O43157 2135 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 DEFB131AP59861 70 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 LY6DQ14210 128 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 BAALCQ8WXS3 180 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 SS18L2Q9UHA2 77 aa14.97□□□□□ -0.01
USP48-201ENST00000308271 EML5Q05BV3 1969 aa14.96□□□□□ -0.01
USP48-201ENST00000308271 C9orf47Q6ZRZ4 202 aa14.96□□□□□ -0.01
USP48-201ENST00000308271 F6UB75 175 aa14.96□□□□□ -0.02
USP48-201ENST00000308271 SPRY2O43597 315 aa14.96□□□□□ -0.02
USP48-201ENST00000308271 MALP21145 153 aa14.96□□□□□ -0.02
USP48-201ENST00000308271 TRAV12-2A0A075B6T6 113 aa14.95□□□□□ -0.02
USP48-201ENST00000308271 IGLC6P0CF74 106 aa14.95□□□□□ -0.02
USP48-201ENST00000308271 WT1P19544 449 aaPredicted RBP14.95□□□□□ -0.02
USP48-201ENST00000308271 C2orf91Q6ZV80 131 aa14.95□□□□□ -0.02
USP48-201ENST00000308271 PIFOQ8TCI5 191 aa14.95□□□□□ -0.02
USP48-201ENST00000308271 TRAV26-1A0A087WT03 109 aa14.94□□□□□ -0.02
USP48-201ENST00000308271 LINC01620Q4KN68 170 aa14.94□□□□□ -0.02
USP48-201ENST00000308271 H3BUA1 57 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 C6orf226Q5I0X4 101 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 DSCR9P59020 149 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 SPANXB1Q9NS25 103 aaPredicted RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 A0A1W2PNU3 283 aaPredicted RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 PRSS47A8MTI9 375 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 FANCD2OSQ96PS1 177 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 SONP18583 2426 aaKnown RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 IGHV3-53P01767 116 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 HOXB4P17483 251 aaPredicted RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 ZNF80P51504 273 aaPredicted RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 CMC4P56277 68 aaPredicted RBP14.93□□□□□ -0.02
USP48-201ENST00000308271 SUMO4Q6EEV6 95 aa14.93□□□□□ -0.02
USP48-201ENST00000308271 TIMM17AQ99595 171 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 TCTEX1D4Q5JR98 221 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 MUSTN1Q8IVN3 82 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 ACYP1P07311 99 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 MED14OSP0DP75 135 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 SOCS3O14543 225 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 C16orf54Q6UWD8 224 aa14.92□□□□□ -0.02
USP48-201ENST00000308271 U3KQK5 164 aa14.91□□□□□ -0.02
USP48-201ENST00000308271 TECTAO75443 2155 aa14.91□□□□□ -0.02
USP48-201ENST00000308271 C11orf86A6NJI1 115 aa14.91□□□□□ -0.02
USP48-201ENST00000308271 CENPVL3A0A0U1RRI6 287 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 A0A1W2PRX2 142 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 HERVK_113P63121 156 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 DYSFO75923 2080 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 Q8N9W7 124 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 KIAA1549Q9HCM3 1950 aa14.9□□□□□ -0.02
USP48-201ENST00000308271 CHD8Q9HCK8 2581 aa14.89□□□□□ -0.03
USP48-201ENST00000308271 A0A0J9YXV3 536 aa14.89□□□□□ -0.03
USP48-201ENST00000308271 PIP4P1Q86T03 277 aa14.89□□□□□ -0.03
USP48-201ENST00000308271 JPT2Q9H910 190 aa14.89□□□□□ -0.03
USP48-201ENST00000308271 ANKHD1Q8IWZ3 2542 aaKnown RBP14.89□□□□□ -0.03
USP48-201ENST00000308271 WISP2O76076 250 aa14.89□□□□□ -0.03
USP48-201ENST00000308271 IGKV2D-26A0A0A0MRZ7 120 aa14.88□□□□□ -0.03
USP48-201ENST00000308271 CRIP1P50238 77 aa14.88□□□□□ -0.03
USP48-201ENST00000308271 PTH2Q96A98 100 aa14.88□□□□□ -0.03
USP48-201ENST00000308271 PF4P02776 101 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms