RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 DKK2Q9UBU2 259 aa17.91■□□□□ 0.46
TRIM54-201ENST00000296098 TRAV12-3A0A0B4J271 114 aa17.9■□□□□ 0.46
TRIM54-201ENST00000296098 SMIM17P0DL12 118 aa17.9■□□□□ 0.46
TRIM54-201ENST00000296098 MPV17L2Q567V2 206 aa17.9■□□□□ 0.46
TRIM54-201ENST00000296098 RASL10AQ92737 203 aa17.9■□□□□ 0.46
TRIM54-201ENST00000296098 ABCA12Q86UK0 2595 aa17.89■□□□□ 0.46
TRIM54-201ENST00000296098 DLEU1O43261 78 aa17.89■□□□□ 0.45
TRIM54-201ENST00000296098 ATP5LO75964 103 aa17.89■□□□□ 0.45
TRIM54-201ENST00000296098 ODF1Q14990 250 aa17.89■□□□□ 0.45
TRIM54-201ENST00000296098 PRSS1P07477 247 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 C20orf78Q9BR46 151 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 CREBBPQ92793 2442 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 EPG5Q9HCE0 2579 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 NUDT3O95989 172 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 SUMO2P61956 95 aaKnown RBP17.88■□□□□ 0.45
TRIM54-201ENST00000296098 GAGE1Q13065 139 aa17.88■□□□□ 0.45
TRIM54-201ENST00000296098 IGKV3-20P01619 116 aa17.87■□□□□ 0.45
TRIM54-201ENST00000296098 CD7P09564 240 aa17.87■□□□□ 0.45
TRIM54-201ENST00000296098 FGF6P10767 208 aa17.87■□□□□ 0.45
TRIM54-201ENST00000296098 C12orf54Q6X4T0 127 aa17.87■□□□□ 0.45
TRIM54-201ENST00000296098 C18orf65Q6ZTR6 163 aa17.86■□□□□ 0.45
TRIM54-201ENST00000296098 C2orf91Q6ZV80 131 aa17.86■□□□□ 0.45
TRIM54-201ENST00000296098 RPL39LQ96EH5 51 aaKnown RBP17.86■□□□□ 0.45
TRIM54-201ENST00000296098 FOXC2Q99958 501 aa17.86■□□□□ 0.45
TRIM54-201ENST00000296098 SLURP1P55000 103 aa17.86■□□□□ 0.45
TRIM54-201ENST00000296098 DEFB136Q30KP8 78 aa17.86■□□□□ 0.45
TRIM54-201ENST00000296098 DUSP14O95147 198 aaKnown RBP17.85■□□□□ 0.45
TRIM54-201ENST00000296098 TCTEX1D4Q5JR98 221 aa17.85■□□□□ 0.45
TRIM54-201ENST00000296098 BVES-AS1Q5T3Y7 98 aa17.85■□□□□ 0.45
TRIM54-201ENST00000296098 POM121L12Q8N7R1 296 aa17.85■□□□□ 0.45
TRIM54-201ENST00000296098 ZMAT4Q9H898 229 aa17.85■□□□□ 0.45
TRIM54-201ENST00000296098 DOPEY2Q9Y3R5 2298 aa17.84■□□□□ 0.45
TRIM54-201ENST00000296098 ADAMTSL5Q6ZMM2 481 aa17.84■□□□□ 0.45
TRIM54-201ENST00000296098 TRAV12-2A0A075B6T6 113 aa17.84■□□□□ 0.45
TRIM54-201ENST00000296098 ORMDL2Q53FV1 153 aa17.84■□□□□ 0.45
TRIM54-201ENST00000296098 FOXI2Q6ZQN5 318 aa17.84■□□□□ 0.45
TRIM54-201ENST00000296098 PPP1R17O96001 155 aa17.83■□□□□ 0.45
TRIM54-201ENST00000296098 CDKN1BP46527 198 aa17.83■□□□□ 0.45
TRIM54-201ENST00000296098 TCTAP57738 103 aa17.83■□□□□ 0.45
TRIM54-201ENST00000296098 KIF25-AS1Q9Y6Z4 181 aa17.83■□□□□ 0.45
TRIM54-201ENST00000296098 MUC4Q99102 2169 aa17.83■□□□□ 0.44
TRIM54-201ENST00000296098 MXRA5Q9NR99 2828 aa17.83■□□□□ 0.44
TRIM54-201ENST00000296098 LINC01619G3V211 115 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 K7EMI3 77 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 BOD1L2Q8IYS8 172 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 IGKCP01834 107 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 SPINK13Q1W4C9 94 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 TMEM86BQ8N661 226 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 TEX29Q8N6K0 151 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 WFDC11Q8NEX6 87 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 C4orf3Q8WVX3 66 aa17.82■□□□□ 0.44
TRIM54-201ENST00000296098 IGHV3-16A0A0C4DH30 117 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 DPM2O94777 84 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 LINC00315P59091 139 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 ORAOV1Q8WV07 137 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 C9orf85Q96MD7 179 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 COX11Q9Y6N1 276 aa17.81■□□□□ 0.44
TRIM54-201ENST00000296098 NMUP48645 174 aa17.8■□□□□ 0.44
TRIM54-201ENST00000296098 NPSP0C0P6 89 aa17.79■□□□□ 0.44
TRIM54-201ENST00000296098 KHDC1LQ5JSQ8 128 aa17.79■□□□□ 0.44
TRIM54-201ENST00000296098 OR11H1Q8NG94 326 aa17.79■□□□□ 0.44
TRIM54-201ENST00000296098 PEMTQ9UBM1 199 aa17.79■□□□□ 0.44
TRIM54-201ENST00000296098 IGHV1OR15-1A0A075B7D0 117 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.78■□□□□ 0.44
TRIM54-201ENST00000296098 AMTNQ6UX39 209 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 Q6ZVH6 145 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 OR9G4Q8NGQ1 327 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 TOMM6Q96B49 74 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 JPT2Q9H910 190 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 HHLA3Q9XRX5 114 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 APCP25054 2843 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 TEX15Q9BXT5 2789 aa17.78■□□□□ 0.44
TRIM54-201ENST00000296098 Q8N1Y9 231 aa17.77■□□□□ 0.44
TRIM54-201ENST00000296098 CSTL1Q9H114 145 aa17.77■□□□□ 0.43
TRIM54-201ENST00000296098 A0A087WX48 190 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 SUMO4Q6EEV6 95 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 PCP2Q8IVA1 136 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 SYT8Q8NBV8 401 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 MRPL35Q9NZE8 188 aaKnown RBP17.76■□□□□ 0.43
TRIM54-201ENST00000296098 MDFICQ9P1T7 246 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 A0A087WWL8 130 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 DUX3Q96PT4 197 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 SCGB3A1Q96QR1 104 aa17.76■□□□□ 0.43
TRIM54-201ENST00000296098 SIVA1O15304 175 aa17.75■□□□□ 0.43
TRIM54-201ENST00000296098 KLHL30-AS1Q8NEE0 82 aa17.75■□□□□ 0.43
TRIM54-201ENST00000296098 TRAV2A0A0B4J234 112 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 DNAJC9-AS1A6NH13 148 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 RPL32P62910 135 aaKnown RBP17.74■□□□□ 0.43
TRIM54-201ENST00000296098 TMEM97Q5BJF2 176 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 HIST2H2BCQ6DN03 193 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 Q6ZSV7 163 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 TRAV12-1A0A0B4J245 112 aa17.74■□□□□ 0.43
TRIM54-201ENST00000296098 AGRNO00468 2067 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 KNCNA6PVL3 124 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 DEFB131AP59861 70 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 ZC2HC1BQ5TFG8 222 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 C2orf66Q6UXQ4 117 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 TMEM160Q9NX00 188 aa17.73■□□□□ 0.43
TRIM54-201ENST00000296098 IGKV2D-26A0A0A0MRZ7 120 aa17.72■□□□□ 0.43
TRIM54-201ENST00000296098 F5H697 171 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms