RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SNHG12Q9BXW3 62 aa8.61□□□□□ -1.03
CUX1-202ENST00000292538 JPT2Q9H910 190 aa8.61□□□□□ -1.03
CUX1-202ENST00000292538 ESM1Q9NQ30 184 aa8.61□□□□□ -1.03
CUX1-202ENST00000292538 PRM2P04554 102 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 LEPP41159 167 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 FAM74A4Q5TZK3 123 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 Q6ZSV7 163 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 OR1N2Q8NGR9 330 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 DLX4Q92988 240 aaPredicted RBP8.6□□□□□ -1.03
CUX1-202ENST00000292538 A0A087WWL8 130 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 DEFB131AP59861 70 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 DYNLRB2Q8TF09 96 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 FLNBO75369 2602 aaKnown RBP8.6□□□□□ -1.03
CUX1-202ENST00000292538 TRAV9-2A0A087WT02 112 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 F5H697 171 aa8.6□□□□□ -1.03
CUX1-202ENST00000292538 HNRNPA3P51991 378 aaKnown RBP8.6□□□□□ -1.03
CUX1-202ENST00000292538 HSBP1L1C9JCN9 74 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 LINC01619G3V211 115 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 M0R143 59 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 OR2K2Q8NGT1 345 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 C20orf144Q9BQM9 153 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 ZNF747Q9BV97 191 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 KMT2BQ9UMN6 2715 aaPredicted RBP8.59□□□□□ -1.03
CUX1-202ENST00000292538 CACNG7P62955 275 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 U3KQK5 164 aa8.59□□□□□ -1.03
CUX1-202ENST00000292538 ADAMTSL5Q6ZMM2 481 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 NEGR1Q7Z3B1 354 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 APRG1Q8IVJ8 170 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 ZNF580Q9UK33 172 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 LENEPQ9Y5L5 61 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 A0A096LNJ9 63 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 PRSS1P07477 247 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 IGLC3P0DOY3 106 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 GATD1Q8NB37 220 aa8.58□□□□□ -1.04
CUX1-202ENST00000292538 RPL39LQ96EH5 51 aaKnown RBP8.58□□□□□ -1.04
CUX1-202ENST00000292538 K7EQG2 157 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 HBDP02042 147 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 TMEM61Q8N0U2 210 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 CNFNQ9BYD5 112 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 MDFICQ9P1T7 246 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 UQCR10Q9UDW1 63 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 AKAP9Q99996 3911 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 A0A0J9YX75 114 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 TMEM89A2RUT3 159 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 SMIM17P0DL12 118 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 CD28P10747 220 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 HINT1P49773 126 aaPredicted RBP8.57□□□□□ -1.04
CUX1-202ENST00000292538 OR9G4Q8NGQ1 327 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 TMEM158Q8WZ71 300 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 CIDEAO60543 219 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 PPBPP02775 128 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 RNASE3P12724 160 aaKnown RBP8.57□□□□□ -1.04
CUX1-202ENST00000292538 STPG4Q8N801 248 aa8.57□□□□□ -1.04
CUX1-202ENST00000292538 SETXQ7Z333 2677 aaKnown RBP8.56□□□□□ -1.04
CUX1-202ENST00000292538 IFI27L1Q96BM0 104 aa8.56□□□□□ -1.04
CUX1-202ENST00000292538 C2CD3Q4AC94 2353 aa8.56□□□□□ -1.04
CUX1-202ENST00000292538 C7orf71A4D174 169 aa8.56□□□□□ -1.04
CUX1-202ENST00000292538 CITED2Q99967 270 aaPredicted RBP8.56□□□□□ -1.04
CUX1-202ENST00000292538 IGHV3OR16-12A0A075B7B8 117 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 CDKN1BP46527 198 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 GOLT1BQ9Y3E0 138 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 IGHV3-73A0A0B4J1V6 119 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 NUDT3O95989 172 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 G0S2P27469 103 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 CD300EQ496F6 205 aaPredicted RBP8.55□□□□□ -1.04
CUX1-202ENST00000292538 PET117Q6UWS5 81 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 Q8N1Y9 231 aa8.55□□□□□ -1.04
CUX1-202ENST00000292538 CBY3A6NI87 242 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 LGALS9O00182 355 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 C4orf3Q8WVX3 66 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 FAM19A4Q96LR4 140 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 PEMTQ9UBM1 199 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 DKK2Q9UBU2 259 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 KLLNB2CW77 178 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 NSUN5P1Q3KNT7 163 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 MYOZ3Q8TDC0 251 aa8.54□□□□□ -1.04
CUX1-202ENST00000292538 NXT2Q9NPJ8 142 aaKnown RBP8.54□□□□□ -1.04
CUX1-202ENST00000292538 RAX2Q96IS3 184 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 AP1S3Q96PC3 154 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 DPH3P1Q9H4G8 78 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 CRXO43186 299 aaPredicted RBP8.53□□□□□ -1.04
CUX1-202ENST00000292538 TSPOP30536 169 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 NRACQ8N912 160 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 FOXC2Q99958 501 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 OTOGQ6ZRI0 2925 aa8.53□□□□□ -1.04
CUX1-202ENST00000292538 CCL24O00175 119 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 NMUP48645 174 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 KRTAP1-1Q07627 177 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 ZNF56Q15929 161 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 Q8N2B8 174 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 RASL10AQ92737 203 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 CD5LO43866 347 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 LAGE3Q14657 143 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 LINC01545Q5VT33 79 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 SAMD13Q5VXD3 122 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 Q8N8P6 123 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 LAMTOR2Q9Y2Q5 125 aa8.52□□□□□ -1.05
CUX1-202ENST00000292538 FCER1GP30273 86 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 RNF152Q8N8N0 203 aa8.51□□□□□ -1.05
CUX1-202ENST00000292538 LINC01006Q8NI28 216 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms