RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 VAMP3Q15836 100 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 TMEM97Q5BJF2 176 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 APRG1Q8IVJ8 170 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 DPH3P1Q9H4G8 78 aa13.76□□□□□ -0.21
SHKBP1-201ENST00000291842 MYOZ3Q8TDC0 251 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 SMIM2Q9BVW6 85 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 UBE2V1Q13404 147 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 DEFB104AQ8WTQ1 72 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 TMEM160Q9NX00 188 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 AGRNO00468 2067 aa13.75□□□□□ -0.21
SHKBP1-201ENST00000291842 KLLNB2CW77 178 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 J3QLI3 93 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 IGKCP01834 107 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 GTSCR1Q86UQ5 136 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 ZMAT4Q9H898 229 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 JPT2Q9H910 190 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 ZNF580Q9UK33 172 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 VPREB3Q9UKI3 123 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 TRAV12-2A0A075B6T6 113 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 SUMO2P61956 95 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 FAM159AQ6UWV7 190 aa13.74□□□□□ -0.21
SHKBP1-201ENST00000291842 IGHV4OR15-8A0A075B7B6 117 aa13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 A0A087WW49 117 aa13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 HOXA3O43365 443 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 IGHV4-31P0DP07 118 aa13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 ZNF843Q8N446 348 aa13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 MRPL35Q9NZE8 188 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 ATP5LO75964 103 aa13.73□□□□□ -0.21
SHKBP1-201ENST00000291842 CREBBPQ92793 2442 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 CD7P09564 240 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 DPM2O94777 84 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 ZC2HC1BQ5TFG8 222 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 NEGR1Q7Z3B1 354 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 AP1S3Q96PC3 154 aa13.72□□□□□ -0.21
SHKBP1-201ENST00000291842 EPG5Q9HCE0 2579 aa13.71□□□□□ -0.21
SHKBP1-201ENST00000291842 CR1P17927 2039 aa13.71□□□□□ -0.21
SHKBP1-201ENST00000291842 TRBV7-9A0A0J9YWB2 115 aa13.71□□□□□ -0.21
SHKBP1-201ENST00000291842 Q6YL49 198 aa13.71□□□□□ -0.21
SHKBP1-201ENST00000291842 ZNF702PQ9H963 129 aa13.71□□□□□ -0.21
SHKBP1-201ENST00000291842 A0A087WWL8 130 aa13.7□□□□□ -0.22
SHKBP1-201ENST00000291842 MED14OSP0DP75 135 aa13.7□□□□□ -0.22
SHKBP1-201ENST00000291842 ADAMTSL5Q6ZMM2 481 aa13.7□□□□□ -0.22
SHKBP1-201ENST00000291842 C18orf65Q6ZTR6 163 aa13.7□□□□□ -0.22
SHKBP1-201ENST00000291842 OR9G4Q8NGQ1 327 aa13.7□□□□□ -0.22
SHKBP1-201ENST00000291842 HOXD3P31249 432 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 DEFB136Q30KP8 78 aa13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 AMMECR1LQ6DCA0 310 aa13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 ZNF469Q96JG9 3925 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 TLN2Q9Y4G6 2542 aa13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 LGALS1P09382 135 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 SNRPD3P62318 126 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-201ENST00000291842 C21orf62-AS1Q17RA5 79 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 Q5PR19 223 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 HIST2H2BDQ6DRA6 164 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 SCGB3A1Q96QR1 104 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 TRAV8-6A0A0B4J262 113 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 A0A0J9YX75 114 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 TMEM89A2RUT3 159 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 K7EQG2 157 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 FSHBP01225 129 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 SPINK13Q1W4C9 94 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 C20orf78Q9BR46 151 aa13.68□□□□□ -0.22
SHKBP1-201ENST00000291842 A0A087WX48 190 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 LINC00315P59091 139 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 ORMDL2Q53FV1 153 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 OR4C5Q8NGB2 326 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 CSTL1Q9H114 145 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 SEC11AP67812 179 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 NAA38Q9BRA0 125 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 MDFICQ9P1T7 246 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 KIF25-AS1Q9Y6Z4 181 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 MYO9AB2RTY4 2548 aa13.67□□□□□ -0.22
SHKBP1-201ENST00000291842 SIVA1O15304 175 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 HSD52Q0P140 79 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 F5H697 171 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 ELANEP08246 267 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 DEFB113Q30KQ7 82 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 FAM74A4Q5TZK3 123 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 SAMD13Q5VXD3 122 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 TOMM6Q96B49 74 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 Q96MF0 132 aa13.66□□□□□ -0.22
SHKBP1-201ENST00000291842 K7EP13 123 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 NXPH4O95158 308 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 SLURP1P55000 103 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 C2orf66Q6UXQ4 117 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 APCP25054 2843 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 UBE2E2Q96LR5 201 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 DUX3Q96PT4 197 aa13.65□□□□□ -0.22
SHKBP1-201ENST00000291842 SUMO4Q6EEV6 95 aa13.64□□□□□ -0.23
SHKBP1-201ENST00000291842 Q8N1Y9 231 aa13.64□□□□□ -0.23
SHKBP1-201ENST00000291842 RAB37Q96AX2 223 aa13.64□□□□□ -0.23
SHKBP1-201ENST00000291842 MAPKAPK5-AS1Q8N8E1 139 aa13.64□□□□□ -0.23
SHKBP1-201ENST00000291842 TCTEX1D4Q5JR98 221 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 NBPF19A0A087WUL8 3843 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 TRBV25-1A0A075B6N4 114 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 IGHV3-16A0A0C4DH30 117 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 LGALS9O00182 355 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 CDKN1BP46527 198 aa13.63□□□□□ -0.23
SHKBP1-201ENST00000291842 SONP18583 2426 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms