RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 XCL2Q9UBD3 114 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 PHLDA3Q9Y5J5 127 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 HLA-DRB4X5D2U9 266 aa12.17□□□□□ -0.46
USP4-201ENST00000265560 ASIPP42127 132 aa12.16□□□□□ -0.46
USP4-201ENST00000265560 IGHV3OR16-12A0A075B7B8 117 aa12.16□□□□□ -0.46
USP4-201ENST00000265560 Q8N1Y9 231 aa12.16□□□□□ -0.46
USP4-201ENST00000265560 URB1-AS1Q96HZ7 61 aa12.16□□□□□ -0.46
USP4-201ENST00000265560 DUSP14O95147 198 aaKnown RBP12.15□□□□□ -0.46
USP4-201ENST00000265560 LEPP41159 167 aa12.15□□□□□ -0.46
USP4-201ENST00000265560 NIT1Q86X76 327 aa12.15□□□□□ -0.46
USP4-201ENST00000265560 CRXO43186 299 aaPredicted RBP12.15□□□□□ -0.46
USP4-201ENST00000265560 AMTP48728 403 aa12.15□□□□□ -0.46
USP4-201ENST00000265560 OR10J3Q5JRS4 329 aa12.15□□□□□ -0.47
USP4-201ENST00000265560 C14orf178Q8N769 122 aaPredicted RBP12.15□□□□□ -0.47
USP4-201ENST00000265560 TMEM18Q96B42 140 aa12.15□□□□□ -0.47
USP4-201ENST00000265560 OR11H12B2RN74 326 aa12.14□□□□□ -0.47
USP4-201ENST00000265560 S100A8P05109 93 aa12.14□□□□□ -0.47
USP4-201ENST00000265560 CKS2P33552 79 aa12.14□□□□□ -0.47
USP4-201ENST00000265560 ZNF493Q6ZR52 646 aa12.14□□□□□ -0.47
USP4-201ENST00000265560 IGLV1-51P01701 117 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 LINC00482Q8N8I6 264 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 DEFB104AQ8WTQ1 72 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 RNF185Q96GF1 192 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 NIT2Q9NQR4 276 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 RPL35AP18077 110 aaKnown RBP12.13□□□□□ -0.47
USP4-201ENST00000265560 RAB4AP20338 218 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 CNFNQ9BYD5 112 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 TSPOP30536 169 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 STHQ8IWL8 128 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 PRELID3AQ96N28 172 aa12.13□□□□□ -0.47
USP4-201ENST00000265560 NPYP01303 97 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 OR5AL1P0C617 328 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 TMEM191AQ9H0A3 160 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 A0A1B0GW15 77 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 HSBP1O75506 76 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 IFI27P40305 119 aaPredicted RBP12.12□□□□□ -0.47
USP4-201ENST00000265560 Q6ZWC4 215 aa12.12□□□□□ -0.47
USP4-201ENST00000265560 A0A087WWL8 130 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 TRBV7-9A0A0J9YWB2 115 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 CBY3A6NI87 242 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 KCNS1Q96KK3 526 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 SNAI2O43623 268 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 IGHV1OR15-1A0A075B7D0 117 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 KRTAP24-1Q3LI83 254 aa12.11□□□□□ -0.47
USP4-201ENST00000265560 ORMDL3Q8N138 153 aa12.1□□□□□ -0.47
USP4-201ENST00000265560 SIGLEC8Q9NYZ4 499 aa12.1□□□□□ -0.47
USP4-201ENST00000265560 MGPP08493 103 aa12.1□□□□□ -0.47
USP4-201ENST00000265560 TRAV2A0A0B4J234 112 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 TRAV25A0A0B4J276 109 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 FAM74A4Q5TZK3 123 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 PRSS3P2Q8NHM4 247 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 ODF3Q96PU9 254 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 LINC01587Q99440 93 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 IGHV3-16A0A0C4DH30 117 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 LINC00614P0C842 121 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 KRTDAPP60985 99 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 LINC00173Q6ZV60 143 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 DEFB125Q8N687 156 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 GATD1Q8NB37 220 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 CITED1Q99966 193 aa12.09□□□□□ -0.47
USP4-201ENST00000265560 SCGB1D1O95968 90 aa12.08□□□□□ -0.48
USP4-201ENST00000265560 TMEM208Q9BTX3 173 aa12.08□□□□□ -0.48
USP4-201ENST00000265560 SMIM15Q7Z3B0 74 aa12.07□□□□□ -0.48
USP4-201ENST00000265560 SMIM6P0DI80 62 aa12.07□□□□□ -0.48
USP4-201ENST00000265560 SCRT2Q9NQ03 307 aa12.07□□□□□ -0.48
USP4-201ENST00000265560 GSN-AS1Q9NRJ2 163 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 ESDP10768 282 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 AZU1P20160 251 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 TDRG1Q3Y452 100 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 MCRIP2Q9BUT9 160 aaKnown RBP12.06□□□□□ -0.48
USP4-201ENST00000265560 IGHV3-73A0A0B4J1V6 119 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 PRIMA1Q86XR5 153 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 C19orf73Q9NVV2 129 aa12.06□□□□□ -0.48
USP4-201ENST00000265560 H0Y8G0 127 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 TNFRSF6BO95407 300 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 CACNG7P62955 275 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 RPL39LQ96EH5 51 aaKnown RBP12.05□□□□□ -0.48
USP4-201ENST00000265560 IGHV1-24A0A0C4DH33 117 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 IGLL1P15814 213 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 ZNF876PQ49A33 203 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 NBEAL1Q6ZS30 2694 aa12.05□□□□□ -0.48
USP4-201ENST00000265560 F5H697 171 aa12.04□□□□□ -0.48
USP4-201ENST00000265560 TRPT1Q86TN4 253 aaKnown RBP12.04□□□□□ -0.48
USP4-201ENST00000265560 IGHV4-4A0A075B6R2 117 aa12.04□□□□□ -0.48
USP4-201ENST00000265560 BEAN1Q3B7T3 259 aa12.04□□□□□ -0.48
USP4-201ENST00000265560 FA2HQ7L5A8 372 aa12.04□□□□□ -0.48
USP4-201ENST00000265560 U3KQK5 164 aa12.04□□□□□ -0.48
USP4-201ENST00000265560 AP5S1Q9NUS5 200 aa12.03□□□□□ -0.48
USP4-201ENST00000265560 A8MTW9 85 aa12.03□□□□□ -0.48
USP4-201ENST00000265560 JOSD1Q15040 202 aaPredicted RBP12.03□□□□□ -0.48
USP4-201ENST00000265560 C1orf158Q8N1D5 194 aa12.03□□□□□ -0.48
USP4-201ENST00000265560 NEGR1Q7Z3B1 354 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 C9orf85Q96MD7 179 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 INSP01308 110 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 GIG44P09565 113 aaPredicted RBP12.02□□□□□ -0.49
USP4-201ENST00000265560 C3orf79P0CE67 100 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 ATOH7Q8N100 152 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 OR2K2Q8NGT1 345 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 AP1S3Q96PC3 154 aa12.02□□□□□ -0.49
USP4-201ENST00000265560 DPH3P1Q9H4G8 78 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms