RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 MSRB1Q9NZV6 116 aa14.3□□□□□ -0.12
NEDD8-201ENST00000250495 APOC3P02656 99 aa14.29□□□□□ -0.12
NEDD8-201ENST00000250495 DNAH10OSP0CZ25 163 aa14.29□□□□□ -0.12
NEDD8-201ENST00000250495 SRSF3P84103 164 aaKnown RBP14.29□□□□□ -0.12
NEDD8-201ENST00000250495 WFDC10BQ8IUB3 73 aa14.29□□□□□ -0.12
NEDD8-201ENST00000250495 MBD3L1Q8WWY6 194 aa14.29□□□□□ -0.12
NEDD8-201ENST00000250495 TVP23CQ96ET8 276 aa14.29□□□□□ -0.12
NEDD8-201ENST00000250495 A0A087WTM6 91 aa14.28□□□□□ -0.12
NEDD8-201ENST00000250495 TRAV8-1A0A0A6YYK1 113 aa14.28□□□□□ -0.12
NEDD8-201ENST00000250495 TYMSP04818 313 aa14.28□□□□□ -0.12
NEDD8-201ENST00000250495 NDFIP1Q9BT67 221 aa14.28□□□□□ -0.12
NEDD8-201ENST00000250495 SERTM2A0A1B0GWG4 89 aa14.27□□□□□ -0.13
NEDD8-201ENST00000250495 F6UZH7 168 aa14.27□□□□□ -0.13
NEDD8-201ENST00000250495 F8W036 122 aa14.27□□□□□ -0.13
NEDD8-201ENST00000250495 HMGB3O15347 200 aaKnown RBP14.27□□□□□ -0.13
NEDD8-201ENST00000250495 ADCYAP1P18509 176 aa14.27□□□□□ -0.13
NEDD8-201ENST00000250495 C10orf126Q8N4M7 172 aa14.27□□□□□ -0.13
NEDD8-201ENST00000250495 CDC34P49427 236 aaPredicted RBP14.26□□□□□ -0.13
NEDD8-201ENST00000250495 GNG5P63218 68 aa14.26□□□□□ -0.13
NEDD8-201ENST00000250495 K7EQM0 130 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 CIDEAO60543 219 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 CRYGDP07320 174 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 ARL14EPLP0DKL9 152 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 GATA1P15976 413 aaPredicted RBP14.25□□□□□ -0.13
NEDD8-201ENST00000250495 TIRAPP58753 221 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 NHLRC2Q8NBF2 726 aa14.25□□□□□ -0.13
NEDD8-201ENST00000250495 SNAPINO95295 136 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 STAG3L2P0CL84 134 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 STAG3L3P0CL85 134 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 FUSP35637 526 aaKnown RBP eCLIP14.24□□□□□ -0.13
NEDD8-201ENST00000250495 C5orf17Q8NAS9 161 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 SFT2D1Q8WV19 159 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 SGK494Q96LW2 274 aa14.24□□□□□ -0.13
NEDD8-201ENST00000250495 EIF5A2Q9GZV4 153 aaKnown RBP14.24□□□□□ -0.13
NEDD8-201ENST00000250495 LOC100131303A0A0U1RQF7 123 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 RBFOX3A6NFN3 312 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 FBLL1A6NHQ2 334 aaKnown RBP14.23□□□□□ -0.13
NEDD8-201ENST00000250495 EPM2AB3EWF7 344 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 NDUFS6O75380 124 aaKnown RBP14.23□□□□□ -0.13
NEDD8-201ENST00000250495 SCO1O75880 301 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 TCRAP04437 139 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 PFN1P07737 140 aaKnown RBP14.23□□□□□ -0.13
NEDD8-201ENST00000250495 PPT1P50897 306 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 ZNF876PQ49A33 203 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 ZNF506Q5JVG8 444 aa14.23□□□□□ -0.13
NEDD8-201ENST00000250495 NKX6-2Q9C056 277 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-201ENST00000250495 IGHV3-38A0A0C4DH36 116 aa14.22□□□□□ -0.13
NEDD8-201ENST00000250495 CTXND1A0A1B0GTU2 59 aa14.22□□□□□ -0.13
NEDD8-201ENST00000250495 TAGLN2P37802 199 aaKnown RBP14.22□□□□□ -0.13
NEDD8-201ENST00000250495 SUN5Q8TC36 379 aa14.22□□□□□ -0.13
NEDD8-201ENST00000250495 RAB24Q969Q5 203 aa14.22□□□□□ -0.13
NEDD8-201ENST00000250495 MAP1LC3B2A6NCE7 125 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 C9JQL5 133 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 IFNA1P01562 189 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 ZNF726P1Q15940 193 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 PRADC1Q9BSG0 188 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 ACTR3CQ9C0K3 210 aaPredicted RBP14.21□□□□□ -0.13
NEDD8-201ENST00000250495 MAP1LC3BQ9GZQ8 125 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 PSG8Q9UQ74 426 aa14.21□□□□□ -0.13
NEDD8-201ENST00000250495 TRAV8-6A0A0B4J262 113 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 RS1O15537 224 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 GCGP01275 180 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 GCHFRP30047 84 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 ZNF80P51504 273 aaPredicted RBP14.2□□□□□ -0.14
NEDD8-201ENST00000250495 XGP55808 180 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 SUMO1P63165 101 aaKnown RBP14.2□□□□□ -0.14
NEDD8-201ENST00000250495 CCL20P78556 96 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 SLC25A29Q8N8R3 303 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 TMEM167BQ9NRX6 74 aa14.2□□□□□ -0.14
NEDD8-201ENST00000250495 TRBV6-4A0A1B0GX49 114 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 FLI1Q01543 452 aaPredicted RBP14.19□□□□□ -0.14
NEDD8-201ENST00000250495 RHOHQ15669 191 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 SMUG1Q53HV7 270 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 CFAP126Q5VTH2 177 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 PTH2Q96A98 100 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 C11orf21Q9P2W6 132 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 EPDR1Q9UM22 224 aa14.19□□□□□ -0.14
NEDD8-201ENST00000250495 PSCAO43653 123 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 CXorf1O96002 111 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 BCL2P10415 239 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 KRTAP10-1P60331 282 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 LINC01556Q5JQF7 62 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 ATRAIDQ6UW56 229 aa14.18□□□□□ -0.14
NEDD8-201ENST00000250495 A0A1B0GV50 99 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 GCSHP23434 173 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 OR10J3Q5JRS4 329 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 SAPCD1Q5SSQ6 148 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 PRNTQ86SH4 94 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 CYB561D1Q8N8Q1 229 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 C9orf85Q96MD7 179 aa14.17□□□□□ -0.14
NEDD8-201ENST00000250495 IGHV3-73A0A0B4J1V6 119 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 IBA57-AS1B1ANH7 110 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 IGLV2-11P01706 119 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 SRP19P09132 144 aaKnown RBP14.16□□□□□ -0.14
NEDD8-201ENST00000250495 TMEM75Q8N9X5 138 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 CLRN3Q8NCR9 226 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 MANBALQ9NQG1 85 aa14.16□□□□□ -0.14
NEDD8-201ENST00000250495 PGPEP1LA6NFU8 196 aa14.15□□□□□ -0.14
NEDD8-201ENST00000250495 GNG13Q9P2W3 67 aa14.15□□□□□ -0.14
NEDD8-201ENST00000250495 VAX2Q9UIW0 290 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms