RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 LEPP41159 167 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 SLURP1P55000 103 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 DEFB136Q30KP8 78 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 C4orf3Q8WVX3 66 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 DPH3P1Q9H4G8 78 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 PHLDA3Q9Y5J5 127 aa14.25□□□□□ -0.13
YBX3-201ENST00000228251 HELZ2Q9BYK8 2649 aaKnown RBP14.25□□□□□ -0.13
YBX3-201ENST00000228251 M0R381 172 aa14.24□□□□□ -0.13
YBX3-201ENST00000228251 Q6ZSV7 163 aa14.24□□□□□ -0.13
YBX3-201ENST00000228251 KIF25-AS1Q9Y6Z4 181 aa14.24□□□□□ -0.13
YBX3-201ENST00000228251 AMTNQ6UX39 209 aa14.24□□□□□ -0.13
YBX3-201ENST00000228251 DPF1Q92782 380 aa14.24□□□□□ -0.13
YBX3-201ENST00000228251 A8MTW9 85 aa14.23□□□□□ -0.13
YBX3-201ENST00000228251 LINC01619G3V211 115 aa14.23□□□□□ -0.13
YBX3-201ENST00000228251 LINC00315P59091 139 aa14.23□□□□□ -0.13
YBX3-201ENST00000228251 RASL10AQ92737 203 aa14.23□□□□□ -0.13
YBX3-201ENST00000228251 ZMAT5Q9UDW3 170 aaKnown RBP14.23□□□□□ -0.13
YBX3-201ENST00000228251 DNAJC9-AS1A6NH13 148 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 CD5LO43866 347 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 FOXI2Q6ZQN5 318 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 LINC00469Q8N7U9 141 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 TP73-AS1Q9UF72 201 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 CCDC168Q8NDH2 2452 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 TRAV12-3A0A0B4J271 114 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 HSBP1L1C9JCN9 74 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 FAM159AQ6UWV7 190 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 C14orf178Q8N769 122 aaPredicted RBP14.22□□□□□ -0.13
YBX3-201ENST00000228251 WFDC12Q8WWY7 111 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 GOLT1BQ9Y3E0 138 aa14.22□□□□□ -0.13
YBX3-201ENST00000228251 SONP18583 2426 aaKnown RBP14.21□□□□□ -0.13
YBX3-201ENST00000228251 TRAV2A0A0B4J234 112 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 TMEM158Q8WZ71 300 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 C9orf85Q96MD7 179 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 AP1S3Q96PC3 154 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 SMIM2Q9BVW6 85 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 ESM1Q9NQ30 184 aa14.21□□□□□ -0.13
YBX3-201ENST00000228251 DUSP14O95147 198 aaKnown RBP14.2□□□□□ -0.14
YBX3-201ENST00000228251 OR11H1Q8NG94 326 aa14.2□□□□□ -0.14
YBX3-201ENST00000228251 C20orf78Q9BR46 151 aa14.2□□□□□ -0.14
YBX3-201ENST00000228251 ITPR2Q14571 2701 aa14.2□□□□□ -0.14
YBX3-201ENST00000228251 IGHV3-16A0A0C4DH30 117 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 LAGE3Q14657 143 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 OR9G4Q8NGQ1 327 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 ZMAT4Q9H898 229 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 SORL1Q92673 2214 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 CDKN1BP46527 198 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 SLC25A34Q6PIV7 304 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 STPG4Q8N801 248 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 OR1N2Q8NGR9 330 aa14.19□□□□□ -0.14
YBX3-201ENST00000228251 ODF1Q14990 250 aa14.18□□□□□ -0.14
YBX3-201ENST00000228251 ANKRD39Q53RE8 183 aa14.18□□□□□ -0.14
YBX3-201ENST00000228251 FOXC2Q99958 501 aa14.18□□□□□ -0.14
YBX3-201ENST00000228251 TRAV12-2A0A075B6T6 113 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 CD7P09564 240 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 COX8AP10176 69 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 SUMO2P61956 95 aaKnown RBP14.17□□□□□ -0.14
YBX3-201ENST00000228251 COL5A1-AS1Q5SY13 56 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 RPL39LQ96EH5 51 aaKnown RBP14.17□□□□□ -0.14
YBX3-201ENST00000228251 C18orf15Q96N68 181 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 IGKV3-20P01619 116 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 SMIM17P0DL12 118 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 FGF6P10767 208 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 SPINK13Q1W4C9 94 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 DLX4Q92988 240 aaPredicted RBP14.17□□□□□ -0.14
YBX3-201ENST00000228251 DUX3Q96PT4 197 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 PEMTQ9UBM1 199 aa14.17□□□□□ -0.14
YBX3-201ENST00000228251 GCN1Q92616 2671 aaKnown RBP14.16□□□□□ -0.14
YBX3-201ENST00000228251 UNC79Q9P2D8 2635 aa14.16□□□□□ -0.14
YBX3-201ENST00000228251 TCAPO15273 167 aa14.16□□□□□ -0.14
YBX3-201ENST00000228251 BATFQ16520 125 aa14.16□□□□□ -0.14
YBX3-201ENST00000228251 DKK2Q9UBU2 259 aa14.16□□□□□ -0.14
YBX3-201ENST00000228251 NF1P21359 2839 aa14.16□□□□□ -0.14
YBX3-201ENST00000228251 K7EMI3 77 aa14.15□□□□□ -0.14
YBX3-201ENST00000228251 TMEM61Q8N0U2 210 aa14.15□□□□□ -0.14
YBX3-201ENST00000228251 KLHL30-AS1Q8NEE0 82 aa14.15□□□□□ -0.14
YBX3-201ENST00000228251 IGHV1OR15-1A0A075B7D0 117 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 HLA-DRB4P13762 266 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 RPL32P62910 135 aaKnown RBP14.14□□□□□ -0.15
YBX3-201ENST00000228251 Q8N1Y9 231 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 JPT2Q9H910 190 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 MDFICQ9P1T7 246 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 HLA-DRB4X5D2U9 266 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 ATP5LO75964 103 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1A1P0DJD3 496 aaKnown RBP14.14□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1CP0DJD4 496 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 FHL3Q13643 280 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1FQ15415 496 aaKnown RBP14.14□□□□□ -0.15
YBX3-201ENST00000228251 C2orf91Q6ZV80 131 aa14.14□□□□□ -0.15
YBX3-201ENST00000228251 PPP1R17O96001 155 aa14.13□□□□□ -0.15
YBX3-201ENST00000228251 MGPP08493 103 aa14.13□□□□□ -0.15
YBX3-201ENST00000228251 HINT1P49773 126 aaPredicted RBP14.13□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1BA6NDE4 496 aaKnown RBP14.12□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1EA6NEQ0 496 aaKnown RBP14.12□□□□□ -0.15
YBX3-201ENST00000228251 H3BMM0 161 aa14.12□□□□□ -0.15
YBX3-201ENST00000228251 RBMY1DP0C7P1 496 aaKnown RBP14.12□□□□□ -0.15
YBX3-201ENST00000228251 DEFB131AP59861 70 aa14.12□□□□□ -0.15
YBX3-201ENST00000228251 DEFB114Q30KQ6 69 aa14.12□□□□□ -0.15
YBX3-201ENST00000228251 HIST2H2BDQ6DRA6 164 aa14.12□□□□□ -0.15
YBX3-201ENST00000228251 HHLA3Q9XRX5 114 aa14.12□□□□□ -0.15
YBX3-201ENST00000228251 KNCNA6PVL3 124 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms