RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LYPD1Q8N2G4 141 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 CCL17Q92583 94 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 TXNDC17Q9BRA2 123 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 FLNBO75369 2602 aaKnown RBP2.78□□□□□ -1.96
SCN1A-221ENST00000641996 IGHV1-18A0A0C4DH31 117 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 ZFP2Q6ZN57 461 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 LINC00474Q9P2X8 69 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 FFAR1O14842 300 aa2.78□□□□□ -1.96
SCN1A-221ENST00000641996 ZNF292O60281 2723 aa2.78□□□□□ -1.97
SCN1A-221ENST00000641996 TOPAZ1Q8N9V7 1692 aa2.78□□□□□ -1.97
SCN1A-221ENST00000641996 M0R1W7 72 aa2.78□□□□□ -1.97
SCN1A-221ENST00000641996 PROP1O75360 226 aa2.78□□□□□ -1.97
SCN1A-221ENST00000641996 PIP4P1Q86T03 277 aa2.78□□□□□ -1.97
SCN1A-221ENST00000641996 FAM223BA6NKX1 122 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 LINC00473A8K010 186 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV1-2P23083 117 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 NDUFA12Q9UI09 145 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 HIGD1CA8MV81 97 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 CFHR3Q02985 330 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 CFAP126Q5VTH2 177 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 Q6ZRU5 148 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 TRPM2O94759 1503 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 EPOPA6NHQ4 379 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 C2CD4DB7Z1M9 353 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 ELSPBP1Q96BH3 223 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 EPPINO95925 133 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 MBD6Q96DN6 1003 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 MAP6D1Q9H9H5 199 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 USP32Q8NFA0 1604 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 NSD1Q96L73 2696 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-221ENST00000641996 VWDEQ8N2E2 1590 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 CRPP02741 224 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 PLXNB2O15031 1838 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 YPEL1O60688 119 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 YPEL2Q96QA6 119 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 BUB1B-PAK6H3BSN5 160 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 PRO1854Q9UHT4 67 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 ALKQ9UM73 1620 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 PIK3C2BO00750 1634 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 PHRF1Q9P1Y6 1649 aaKnown RBP2.77□□□□□ -1.97
SCN1A-221ENST00000641996 LOC100131303A0A0U1RQF7 123 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 PRM2P04554 102 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 DEFB127Q9H1M4 99 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 RNF114Q9Y508 228 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 IGLV3-27P01718 113 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 ZNF883P0CG24 379 aa2.77□□□□□ -1.97
SCN1A-221ENST00000641996 DDX60Q8IY21 1712 aaKnown RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 IGHV1-3A0A0C4DH29 117 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TMEM141Q96I45 108 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 PROK2Q9HC23 129 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 IGKV1D-43A0A0B4J1Z2 117 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 K7EQD1 137 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TRBV12-3P01733 135 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TIMM21Q9BVV7 248 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 CFAP46Q8IYW2 2715 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 CCL16O15467 120 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 HOXA4Q00056 320 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 C12orf73Q69YU5 71 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 KMT2BQ9UMN6 2715 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 KIDINS220Q9ULH0 1771 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 PLA2G2AP14555 144 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 Q6ZR03 302 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 K7EM74 188 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 NANOS3P60323 173 aaKnown RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TNP2Q05952 138 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 COL14A1Q05707 1796 aaKnown RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 CD24P25063 80 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 ZNF80P51504 273 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 PVRIGQ6DKI7 326 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 DYNAPQ8N1N2 210 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TOGARAM1Q9Y4F4 1720 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 A0A0G2JRQ6 117 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 KISS1Q15726 138 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 C15orf32Q32M92 178 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 HS3ST6Q96QI5 342 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 A0A1B0GXF2 115 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 CMC4P56277 68 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 LINC00528Q8N1L1 170 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 TIMM9Q9Y5J7 89 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 CCKP06307 115 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 C6orf106Q9H6K1 298 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-221ENST00000641996 X6R8D5 127 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 C2orf91Q6ZV80 131 aa2.76□□□□□ -1.97
SCN1A-221ENST00000641996 FLNAP21333 2647 aaKnown RBP2.75□□□□□ -1.97
SCN1A-221ENST00000641996 PLNP26678 52 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 IGKV1-5P01602 117 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 PLA2G2CQ5R387 149 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 SLC48A1Q6P1K1 146 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 RPP21Q9H633 154 aaKnown RBP2.75□□□□□ -1.97
SCN1A-221ENST00000641996 CYYR1Q96J86 154 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 ALS2Q96Q42 1657 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 GLI2P10070 1586 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 H0Y9J4 135 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 EFNA4P52798 201 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 C2orf83Q53S99 150 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 C18orf12Q96KH6 178 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 BAALC-AS2P0C853 105 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 DEFB106AQ8N104 65 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 TRGV9Q99603 122 aa2.75□□□□□ -1.97
SCN1A-221ENST00000641996 C6orf223Q8N319 242 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 207.1 ms