RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FAM30AQ9NZY2 134 aa11.04□□□□□ -0.64
CLN3-264ENST00000637985 EIF3GO75821 320 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLN3-264ENST00000637985 OXTP01178 125 aa11.03□□□□□ -0.64
CLN3-264ENST00000637985 ASB13Q8WXK3 278 aa11.03□□□□□ -0.64
CLN3-264ENST00000637985 MRPL16Q9NX20 251 aaKnown RBP11.03□□□□□ -0.64
CLN3-264ENST00000637985 IGLV5-52A0A0A0MRZ9 124 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 PAX4O43316 350 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 MUC21Q5SSG8 566 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 FAM159AQ6UWV7 190 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 SPXQ9BT56 116 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 PSMG3Q9BT73 122 aaPredicted RBP11.02□□□□□ -0.65
CLN3-264ENST00000637985 PRO0255Q9UI72 69 aa11.02□□□□□ -0.65
CLN3-264ENST00000637985 TRGV11A0A075B6L2 103 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 NXPH4O95158 308 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 MBP02144 154 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 STAG3L2P0CL84 134 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 STAG3L3P0CL85 134 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 CDC34P49427 236 aaPredicted RBP11.01□□□□□ -0.65
CLN3-264ENST00000637985 SERF2P84101 59 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 TDRG1Q3Y452 100 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 GOLT1AQ6ZVE7 132 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 LINC00528Q8N1L1 170 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 HSD17B11Q8NBQ5 300 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 RPH3ALQ9UNE2 315 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 ICOSQ9Y6W8 199 aa11.01□□□□□ -0.65
CLN3-264ENST00000637985 SERTM2A0A1B0GWG4 89 aa11□□□□□ -0.65
CLN3-264ENST00000637985 HMGB3O15347 200 aaKnown RBP11□□□□□ -0.65
CLN3-264ENST00000637985 IGHV3-53P01767 116 aa11□□□□□ -0.65
CLN3-264ENST00000637985 ARL14EPLP0DKL9 152 aa11□□□□□ -0.65
CLN3-264ENST00000637985 ATP6V0CP27449 155 aa11□□□□□ -0.65
CLN3-264ENST00000637985 TMEM183BQ1AE95 376 aa11□□□□□ -0.65
CLN3-264ENST00000637985 TMEM183AQ8IXX5 376 aa11□□□□□ -0.65
CLN3-264ENST00000637985 SUN5Q8TC36 379 aa11□□□□□ -0.65
CLN3-264ENST00000637985 RASL10AQ92737 203 aa11□□□□□ -0.65
CLN3-264ENST00000637985 HHLA3Q9XRX5 114 aa11□□□□□ -0.65
CLN3-264ENST00000637985 TRAV21A0A0B4J279 112 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 GIPP09681 153 aaPredicted RBP10.99□□□□□ -0.65
CLN3-264ENST00000637985 CRYBA4P53673 196 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 FHL2Q14192 279 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 IQCF2Q8IXL9 164 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 NTN5Q8WTR8 489 aaPredicted RBP10.99□□□□□ -0.65
CLN3-264ENST00000637985 RAB24Q969Q5 203 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 TREM1Q9NP99 234 aa10.99□□□□□ -0.65
CLN3-264ENST00000637985 C1QBP02746 253 aa10.98□□□□□ -0.65
CLN3-264ENST00000637985 MRPL23Q16540 153 aaKnown RBP10.98□□□□□ -0.65
CLN3-264ENST00000637985 INO80EQ8NBZ0 244 aaPredicted RBP10.98□□□□□ -0.65
CLN3-264ENST00000637985 MSRB1Q9NZV6 116 aa10.98□□□□□ -0.65
CLN3-264ENST00000637985 TNFSF18Q9UNG2 199 aa10.98□□□□□ -0.65
CLN3-264ENST00000637985 LRP2P98164 4655 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 TRAV8-1A0A0A6YYK1 113 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 TRGV4A0A0C4DH28 118 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 GCHFRP30047 84 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 GNG5P63218 68 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 Q5BKY6 102 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 C5orf17Q8NAS9 161 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 TVP23CQ96ET8 276 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 KCNS1Q96KK3 526 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 C8orf49Q96NF6 230 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 NDFIP1Q9BT67 221 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 TMEM167BQ9NRX6 74 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 NAGKQ9UJ70 344 aa10.97□□□□□ -0.65
CLN3-264ENST00000637985 TRAV9-2A0A087WT02 112 aa10.96□□□□□ -0.65
CLN3-264ENST00000637985 K7EQM0 130 aa10.96□□□□□ -0.65
CLN3-264ENST00000637985 M0R2P5 195 aa10.96□□□□□ -0.65
CLN3-264ENST00000637985 CXorf1O96002 111 aa10.96□□□□□ -0.65
CLN3-264ENST00000637985 TCRAP04437 139 aa10.96□□□□□ -0.65
CLN3-264ENST00000637985 ACTR3CQ9C0K3 210 aaPredicted RBP10.96□□□□□ -0.65
CLN3-264ENST00000637985 BORCS7-ASMTA0A0B4J1R7 106 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 TRAV4A0A0B4J268 109 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 IGHV3-16A0A0C4DH30 117 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 LRCOL1A6NCL2 159 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 F6UZH7 168 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 GNRH2O43555 120 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 KRTAP10-4P60372 401 aaPredicted RBP10.95□□□□□ -0.66
CLN3-264ENST00000637985 NEGR1Q7Z3B1 354 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 ZNF479Q96JC4 524 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 SH3BGRL3Q9H299 93 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 SDF2L1Q9HCN8 221 aa10.95□□□□□ -0.66
CLN3-264ENST00000637985 RNF222A6NCQ9 220 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 FBLL1A6NHQ2 334 aaKnown RBP10.94□□□□□ -0.66
CLN3-264ENST00000637985 K7EP13 123 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 ORM1P02763 201 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 TYMSP04818 313 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 SFTA3P0C7M3 94 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 LYPD5Q6UWN5 251 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 Q6ZSA8 131 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 LY96Q9Y6Y9 160 aa10.94□□□□□ -0.66
CLN3-264ENST00000637985 FXYD6-FXYD2A0A087WZ82 144 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 K7EQD1 137 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 SRIP30626 198 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 SUMO1P63165 101 aaKnown RBP10.93□□□□□ -0.66
CLN3-264ENST00000637985 RPL7L1Q6DKI1 246 aaKnown RBP10.93□□□□□ -0.66
CLN3-264ENST00000637985 OR4C5Q8NGB2 326 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 OR2T35Q8NGX2 323 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 PCNPQ8WW12 178 aaKnown RBP10.93□□□□□ -0.66
CLN3-264ENST00000637985 EPDR1Q9UM22 224 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 PSG8Q9UQ74 426 aa10.93□□□□□ -0.66
CLN3-264ENST00000637985 A0A1W2PRE2 83 aa10.92□□□□□ -0.66
CLN3-264ENST00000637985 GGTLC3B5MD39 225 aa10.92□□□□□ -0.66
CLN3-264ENST00000637985 TAAR5O14804 337 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms