RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 UNQ5815/PRO19632Q6UWF5 114 aa-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 OTUD6BQ8N6M0 293 aa-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 SPRR2FQ96RM1 72 aa-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 VPS29Q9UBQ0 182 aa-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 N4BP2Q86UW6 1770 aaPredicted RBP-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 GOLGA3Q08378 1498 aa-2.34□□□□□ -2.78
SCN1A-215ENST00000637285 TRBV10-1A0A0K0K1A3 114 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 IFITM5A6NNB3 132 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 SPRR1BP22528 89 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 INSL3P51460 131 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 DCDP81605 110 aaKnown RBP-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 ITGB3BPQ13352 177 aaPredicted RBP-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 CCSMST1Q4G0I0 132 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 FXYD6Q9H0Q3 95 aa-2.35□□□□□ -2.79
SCN1A-215ENST00000637285 IQCF5A8MTL0 148 aa-2.36□□□□□ -2.79
SCN1A-215ENST00000637285 MRPS36P82909 103 aaKnown RBP-2.36□□□□□ -2.79
SCN1A-215ENST00000637285 CLEC2BQ92478 149 aa-2.36□□□□□ -2.79
SCN1A-215ENST00000637285 USP54Q70EL1 1684 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 NCAPD3P42695 1498 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 TRGV1A0A0A0MS02 117 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 CLDN24A6NM45 220 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 C5orf58C9J3I9 102 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 BANF1O75531 89 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 DEXIO95424 95 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 SERPINA6P08185 405 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 FKBP1CQ5VVH2 108 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 SLC48A1Q6P1K1 146 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 TRAPPC5Q8IUR0 188 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 CLDN22Q8N7P3 220 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 PTH2Q96A98 100 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 PARVBQ9HBI1 364 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 KIDINS220Q9ULH0 1771 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 PIK3C2GO75747 1445 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 KIAA1107Q9UPP5 1409 aa-2.37□□□□□ -2.79
SCN1A-215ENST00000637285 SNAPC4Q5SXM2 1469 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 A0A087WUJ7 227 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 PIN1P1O15428 100 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 YKT6O15498 198 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 MFSD11O43934 449 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 SPINK4O60575 86 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 EDF1O60869 148 aaKnown RBP-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 HBBP68871 147 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 C4orf33Q8N1A6 199 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 TRIM4Q9C037 500 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 CHMP4BQ9H444 224 aaKnown RBP-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 MPC1Q9Y5U8 109 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 TSC2P49815 1807 aa-2.38□□□□□ -2.79
SCN1A-215ENST00000637285 NUP210LQ5VU65 1888 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 BCE1O60756 84 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 OR2H2O95918 312 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 TFF1P04155 84 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 HADHBP55084 474 aaKnown RBP-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 SKP1P63208 163 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 OR2H1Q9GZK4 316 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 TP53AIP1Q9HCN2 124 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 RTL9Q8NET4 1388 aa-2.39□□□□□ -2.79
SCN1A-215ENST00000637285 TCRBV3S1A0A5B6 114 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 ERICH2A1L162 156 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 NPFFO15130 113 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 IFNA5P01569 189 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 TRGC2P03986 189 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 GTF2A1P52655 376 aaPredicted RBP-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 FAM9CQ8IZT9 166 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 USE1Q9NZ43 259 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 SCP2D1Q9UJQ7 156 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 PRELID3BQ9Y3B1 194 aa-2.4□□□□□ -2.79
SCN1A-215ENST00000637285 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 DEGS1O15121 323 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 IFNA14P01570 189 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 TPM1P09493 284 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 RPL35P42766 123 aaKnown RBP-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 POLR2JP52435 117 aaKnown RBP-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 DEFB135Q30KP9 77 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 GUCA1BQ9UMX6 200 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 V9GYV3 84 aa-2.41□□□□□ -2.8
SCN1A-215ENST00000637285 TMEM210A6NLX4 147 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 HMGB3O15347 200 aaKnown RBP-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 IFNA16P05015 189 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 COX6B1P14854 86 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 SSBP1Q04837 148 aaKnown RBP-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 CCDC122Q5T0U0 273 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 PHF5AQ7RTV0 110 aaKnown RBP-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 OR4S1Q8NGB4 309 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 DIRC1Q969H9 104 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 MCEEQ96PE7 176 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 SMIM7Q9BQ49 75 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 OR2J1Q9GZK6 312 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 TAF9BQ9HBM6 251 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 HTTP42858 3142 aa-2.42□□□□□ -2.8
SCN1A-215ENST00000637285 TRBV6-1A0A0K0K1D8 114 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 M0R2P5 195 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 CCL3L1P16619 93 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 HIST1H3AP68431 136 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 CYP2G1PQ6ZSU1 146 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 FKBP11Q9NYL4 201 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 VPS13DQ5THJ4 4388 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 PLXNA2O75051 1894 aa-2.43□□□□□ -2.8
SCN1A-215ENST00000637285 UBR2Q8IWV8 1755 aa-2.44□□□□□ -2.8
SCN1A-215ENST00000637285 WDR7Q9Y4E6 1490 aa-2.44□□□□□ -2.8
SCN1A-215ENST00000637285 PLXNB2O15031 1838 aa-2.44□□□□□ -2.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms