RNA–Protein interactions for RNA: ENST00000635997.1

NEDD4L-238, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 5 BASIC

Gene NEDD4L, Length 4,402 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-238	ENST00000635997	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.21	□□□□□ -0.61
NEDD4L-238	ENST00000635997	KIAA1549	Q9HCM3	1950 aa		11.21	□□□□□ -0.61
NEDD4L-238	ENST00000635997	PRR20E	P86478	221 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRR20C	P86479	221 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRR20D	P86480	221 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRR20B	P86481	221 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRR20A	P86496	221 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	MORN5	Q5VZ52	161 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997		Q8N9W7	124 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	COX6C	P09669	75 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	SLURP1	P55000	103 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PAX2	Q02962	417 aa		11.21	□□□□□ -0.62
NEDD4L-238	ENST00000635997	RPL36A	P83881	106 aa	Known RBP	11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	RPL36AL	Q969Q0	106 aa	Known RBP	11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRR25	Q96S07	402 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TYMS	P04818	313 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ESD	P10768	282 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	SMIM13	P0DJ93	91 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997		Q6ZPA2	131 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TTC9C	Q8N5M4	171 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CSTL1	Q9H114	145 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	DPH3P1	Q9H4G8	78 aa		11.2	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CKS1B	P61024	79 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	MRPL36	Q9P0J6	103 aa	Known RBP	11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997		K7EIM0	57 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	DEFB1	P60022	68 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ATP5L2	Q7Z4Y8	100 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TMEM86B	Q8N661	226 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	FXYD5	Q96DB9	178 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	AJUBA	Q96IF1	538 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	C1QTNF4	Q9BXJ3	329 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997		H3BRN7	92 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	IGLL1	P15814	213 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	MAL	P21145	153 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	RBX1	P62877	108 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ORMDL2	Q53FV1	153 aa		11.19	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ANXA2R	Q3ZCQ2	193 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TRAV13-1	A0A0B4J241	112 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997		A0A1B0GWB2	263 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ADARB2-AS1	A8MUL3	147 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE7	O76087	117 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE12F	P0CL80	117 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE12G	P0CL81	117 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE12I	P0CL82	117 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	MS4A6A	Q9H2W1	248 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	IGHV7-4-1	A0A0J9YVY3	117 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRSS47	A8MTI9	375 aa		11.18	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ODF3L1	Q8IXM7	274 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CITED2	Q99967	270 aa	Predicted RBP	11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	FAM231B	A6NCW3	169 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PYGO2	Q9BRQ0	406 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	SMAD5-AS1	Q9Y6J3	95 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	LINC01548	A6NM66	108 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TRIO	O75962	3097 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	IGLV2-14	P01704	120 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	NEGR1	Q7Z3B1	354 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	APRG1	Q8IVJ8	170 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	ZC2HC1A	Q96GY0	325 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	TRAV26-2	A0A0B4J265	109 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	APOC4	P55056	127 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	PRADC1	Q9BSG0	188 aa		11.17	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE12J	A6NER3	117 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997		F5H768	121 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997		H3BRM9	83 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CTSG	P08311	255 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE4	Q13068	117 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE5	Q13069	117 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	GAGE13	Q4V321	117 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	YPEL4	Q96NS1	127 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	MRPL27	Q9P0M9	148 aa	Known RBP	11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	SMPX	Q9UHP9	88 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	EML5	Q05BV3	1969 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	LRP4	O75096	1905 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997		A0A096LPF7	62 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997		Q0VG73	95 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	LAGE3	Q14657	143 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	IGHV3-38	A0A0C4DH36	116 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	AGPAT4-IT1	Q9H0P7	198 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	XIRP2	A4UGR9	3374 aa		11.16	□□□□□ -0.62
NEDD4L-238	ENST00000635997	IGKV1OR2-108	A0A075B7D4	117 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	NPC2	P61916	151 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CFAP161	Q6P656	301 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CRIP3	Q6Q6R5	217 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	DYNAP	Q8N1N2	210 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	C8orf31	Q8N9H6	132 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	LY96	Q9Y6Y9	160 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	DPM2	O94777	84 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	THAP8	Q8NA92	274 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	COL5A1	P20908	1838 aa	Predicted RBP	11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	HIST2H2BD	Q6DRA6	164 aa		11.15	□□□□□ -0.62
NEDD4L-238	ENST00000635997	CRP	P02741	224 aa		11.15	□□□□□ -0.63
NEDD4L-238	ENST00000635997	GP9	P14770	177 aa		11.15	□□□□□ -0.63
NEDD4L-238	ENST00000635997	MRPL16	Q9NX20	251 aa	Known RBP	11.15	□□□□□ -0.63
NEDD4L-238	ENST00000635997	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.15	□□□□□ -0.63
NEDD4L-238	ENST00000635997	PATE2	Q6UY27	113 aa		11.14	□□□□□ -0.63
NEDD4L-238	ENST00000635997		K7EP13	123 aa		11.14	□□□□□ -0.63
NEDD4L-238	ENST00000635997	FOXE3	Q13461	319 aa		11.14	□□□□□ -0.63
NEDD4L-238	ENST00000635997		I3L2K1	104 aa		11.14	□□□□□ -0.63
NEDD4L-238	ENST00000635997	TRAV2	A0A0B4J234	112 aa		11.13	□□□□□ -0.63
NEDD4L-238	ENST00000635997	C5orf56	Q8N8D9	126 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 135 ms