RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HELZ2Q9BYK8 2649 aaKnown RBP8.38□□□□□ -1.07
UPF3A-212ENST00000619079 M0QXV9 152 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 TNFRSF13BO14836 293 aaPredicted RBP8.38□□□□□ -1.07
UPF3A-212ENST00000619079 FAM27E3Q08E93 113 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 SRSF9Q13242 221 aaKnown RBP eCLIP8.38□□□□□ -1.07
UPF3A-212ENST00000619079 SCGB1D4Q6XE38 83 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 FAM110AQ9BQ89 295 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 B5MCH6 92 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 TMEM95Q3KNT9 176 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 RNF5Q99942 180 aa8.38□□□□□ -1.07
UPF3A-212ENST00000619079 USP9XQ93008 2570 aaPredicted RBP8.37□□□□□ -1.07
UPF3A-212ENST00000619079 LRRK2Q5S007 2527 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 RHODO00212 210 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 IGHV1-8P0DP01 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GATA1P15976 413 aaPredicted RBP8.37□□□□□ -1.07
UPF3A-212ENST00000619079 CNTFRP26992 372 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 ORMDL2Q53FV1 153 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 NRACQ8N912 160 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 Q8TAT8 98 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 RNASE6Q93091 150 aaKnown RBP8.37□□□□□ -1.07
UPF3A-212ENST00000619079 FBXL15Q9H469 300 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE12JA6NER3 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 ZNF815PA8K554 130 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE7O76087 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE12FP0CL80 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE12GP0CL81 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE12IP0CL82 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 PRB4P10163 310 aaPredicted RBP8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GRNP28799 593 aaKnown RBP8.37□□□□□ -1.07
UPF3A-212ENST00000619079 DLX6P56179 175 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE2BQ13066 116 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE4Q13068 117 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE2EQ4V326 116 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 TMEM155Q4W5P6 130 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 ZNF575Q86XF7 245 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 PTH2Q96A98 100 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 GAGE2DQ9UEU5 116 aa8.37□□□□□ -1.07
UPF3A-212ENST00000619079 PLXNB1O43157 2135 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 ARFGEF3Q5TH69 2177 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 TRBV7-9A0A0J9YWB2 115 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 SCGB2A1O75556 95 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 SNCGO76070 127 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 ZNF672Q499Z4 452 aaPredicted RBP8.36□□□□□ -1.07
UPF3A-212ENST00000619079 ZFP2Q6ZN57 461 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 PRADC1Q9BSG0 188 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 TENM4Q6N022 2769 aa8.36□□□□□ -1.07
UPF3A-212ENST00000619079 SPTAN1Q13813 2472 aaKnown RBP8.36□□□□□ -1.07
UPF3A-212ENST00000619079 CNIH1O95406 144 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 CD7P09564 240 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 CCL8P80075 99 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 ANKRD29Q8N6D5 301 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 RAX2Q96IS3 184 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 PSMG3-AS1Q96PY0 264 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 DOPEY1Q5JWR5 2465 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 IGHV1-3A0A0C4DH29 117 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 TCL1BO95988 128 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 SCGB1C2P0DMR2 95 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 EFNA4P52798 201 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 NDUFV3P56181 108 aaKnown RBP8.35□□□□□ -1.07
UPF3A-212ENST00000619079 FBXL19-AS1Q494R0 122 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 Q6Q795 121 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 NDUFA11Q86Y39 141 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 NEXN-AS1Q8NBZ9 246 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 SCGB3A1Q96QR1 104 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 SMIM2Q9BVW6 85 aa8.35□□□□□ -1.07
UPF3A-212ENST00000619079 GCN1Q92616 2671 aaKnown RBP8.35□□□□□ -1.07
UPF3A-212ENST00000619079 LOXP28300 417 aaPredicted RBP8.34□□□□□ -1.07
UPF3A-212ENST00000619079 NUP37Q8NFH4 326 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 TOMM6Q96B49 74 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 RBAKDNA6NC62 111 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 H3BVH4 76 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 C19orf84I3L1E1 186 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 FCN3O75636 299 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 NHLRC4P0CG21 123 aaPredicted RBP8.34□□□□□ -1.07
UPF3A-212ENST00000619079 MFAP4P55083 255 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 TTC32Q5I0X7 151 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 LINC01560Q8TB33 94 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 SLC50A1Q9BRV3 221 aa8.34□□□□□ -1.07
UPF3A-212ENST00000619079 TMEM178BH3BS89 294 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 HERVK_113P61574 105 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 IGHV4-4A0A075B6R2 117 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 C17orf100A8MU93 164 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 IFITM1P13164 125 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 COX6B1P14854 86 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 PAPPA-AS1Q5QFB9 102 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 C10orf126Q8N4M7 172 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 KAAG1Q9UBP8 84 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 CADP27708 2225 aa8.33□□□□□ -1.08
UPF3A-212ENST00000619079 IGLV1-47P01700 117 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 TRGV3P03979 118 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 SFTA2Q6UW10 78 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 BUB1B-PAK6H3BSN5 160 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 SLC25A20O43772 301 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 HLA-DMBP28068 263 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 RPL32P62910 135 aaKnown RBP8.32□□□□□ -1.08
UPF3A-212ENST00000619079 ERCC8Q13216 396 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 ABCA1O95477 2261 aa8.32□□□□□ -1.08
UPF3A-212ENST00000619079 TRAV8-2A0A0B4J237 113 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 CENPVL3A0A0U1RRI6 287 aa8.31□□□□□ -1.08
UPF3A-212ENST00000619079 IGFBPL1Q8WX77 278 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms