RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RNF5Q99942 180 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 GINS3Q9BRX5 216 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 RHPN1-AS1Q9BWJ2 59 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF436Q9C0F3 470 aaPredicted RBP2.72□□□□□ -1.97
LINC00540-201ENST00000611481 MIXL1Q9H2W2 232 aa2.72□□□□□ -1.97
LINC00540-201ENST00000611481 ZNF705FA8MVS1 300 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 GPR31O00270 319 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 SOCS1O15524 211 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 PDE6DO43924 150 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 SCO1O75880 301 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 INSP01308 110 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ZNF705DP0CH99 300 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ZNF705BP0CI00 300 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 SULT1A3P0DMM9 295 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 SULT1A4P0DMN0 295 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 PPP1CCP36873 323 aaKnown RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ATP5G3P48201 142 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 JOSD1Q15040 202 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 IAH1Q2TAA2 248 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 MORN2Q502X0 79 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 LINC01590Q5TEZ4 76 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 FA2HQ7L5A8 372 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ATP5L2Q7Z4Y8 100 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 TTC9CQ8N5M4 171 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 SLC25A29Q8N8R3 303 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 OR4B1Q8NGF8 309 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 OR51A2Q8NGJ7 313 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 OR5H2Q8NGV7 314 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 OTOSQ8NHW6 89 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 GALMQ96C23 342 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 GNPNAT1Q96EK6 184 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 OR52B2Q96RD2 323 aa2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ZNF2Q9BSG1 426 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 ZNF706Q9Y5V0 76 aaPredicted RBP2.71□□□□□ -1.98
LINC00540-201ENST00000611481 A0A0J9YY99 117 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 AIPO00170 330 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 MAS1P04201 325 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 ZNF688P0C7X2 276 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 SCGB1A1P11684 91 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 PSMB3P49720 205 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 HSPE1P61604 102 aaKnown RBP2.7□□□□□ -1.98
LINC00540-201ENST00000611481 C1orf194Q5T5A4 169 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 TCF24Q7RTU0 167 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 TMEM75Q8N9X5 138 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 OR8A1Q8NGG7 326 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 OR10K1Q8NGX5 313 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 OR10J5Q8NHC4 309 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 LHFPL5Q8TAF8 219 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 ACOT12Q8WYK0 555 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 HDHD3Q9BSH5 251 aaPredicted RBP2.7□□□□□ -1.98
LINC00540-201ENST00000611481 MARVELD1Q9BSK0 173 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 C20orf27Q9GZN8 174 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 GTSF1LQ9H1H1 148 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 IFI27L2Q9H2X8 130 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 RPP21Q9H633 154 aaKnown RBP2.7□□□□□ -1.98
LINC00540-201ENST00000611481 RSL24D1Q9UHA3 163 aaKnown RBP2.7□□□□□ -1.98
LINC00540-201ENST00000611481 RABAC1Q9UI14 185 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 PKIGQ9Y2B9 76 aa2.7□□□□□ -1.98
LINC00540-201ENST00000611481 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.69□□□□□ -1.98
LINC00540-201ENST00000611481 TRBV7-1A0A0A6YYK4 115 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 IGHV7-4-1A0A0J9YVY3 117 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 BPY2O14599 106 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 BPGMP07738 259 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 NUDT2P50583 147 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 FXYD7P58549 80 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 PIGYQ3MUY2 71 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 C10orf55Q5SWW7 151 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 C9orf129Q5T035 196 aaKnown RBP2.69□□□□□ -1.98
LINC00540-201ENST00000611481 BCL2L15Q5TBC7 163 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 PDPNQ86YL7 162 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 PCP2Q8IVA1 136 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 ORMDL3Q8N138 153 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 STX19Q8N4C7 294 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 OR4K15Q8NH41 348 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 CYYR1Q96J86 154 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 LINC00477Q96M19 166 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 THTPAQ9BU02 230 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 TTTY10Q9BZA0 68 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 C8orf17Q9NRJ1 99 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 CMTM6Q9NX76 183 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 TRAPPC2LQ9UL33 140 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 USH2AO75445 5202 aa2.69□□□□□ -1.98
LINC00540-201ENST00000611481 MUC17Q685J3 4493 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 IGKV1-9A0A0C4DH69 117 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 A0A1B0GVX0 72 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 FAM168BA1KXE4 195 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 OR2T8A6NH00 312 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 A8MWL6 223 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 B4DEV8 164 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 NDUFA4O00483 81 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 RGS5O15539 181 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 APOA2P02652 100 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 PFN1P07737 140 aaKnown RBP2.68□□□□□ -1.98
LINC00540-201ENST00000611481 FGF6P10767 208 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 ORM2P19652 201 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 CCL1P22362 96 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 GABARAPL2P60520 117 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 DAZ2Q13117 558 aaKnown RBP2.68□□□□□ -1.98
LINC00540-201ENST00000611481 IL15RAQ13261 267 aa2.68□□□□□ -1.98
LINC00540-201ENST00000611481 WFDC2Q14508 124 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms