RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PPT1P50897 306 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 IBA57Q5T440 356 aaKnown RBP10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 FAM159AQ6UWV7 190 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 COX8CQ7Z4L0 72 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 ZNF680Q8NEM1 530 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 LYPD6BQ8NI32 183 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 FMC1Q96HJ9 113 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 TCEAL7Q9BRU2 100 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 DERL1Q9BUN8 251 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 MANBALQ9NQG1 85 aa10.01□□□□□ -0.81
SHKBP1-217ENST00000598558 IGKV3D-20A0A0C4DH25 116 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 IGHV3-16A0A0C4DH30 117 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 PFN1P07737 140 aaKnown RBP10□□□□□ -0.81
SHKBP1-217ENST00000598558 NHLRC2Q8NBF2 726 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 C11orf52Q96A22 123 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 MRPL16Q9NX20 251 aaKnown RBP10□□□□□ -0.81
SHKBP1-217ENST00000598558 ZFP30Q9Y2G7 519 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 ALMS1Q8TCU4 4167 aa10□□□□□ -0.81
SHKBP1-217ENST00000598558 TRGV1A0A0A0MS02 117 aa9.99□□□□□ -0.81
SHKBP1-217ENST00000598558 HOXA5P20719 270 aa9.99□□□□□ -0.81
SHKBP1-217ENST00000598558 UBE2G1P62253 170 aa9.99□□□□□ -0.81
SHKBP1-217ENST00000598558 PCNPQ8WW12 178 aaKnown RBP9.99□□□□□ -0.81
SHKBP1-217ENST00000598558 MLST8Q9BVC4 326 aa9.99□□□□□ -0.81
SHKBP1-217ENST00000598558 TEX46H3BTG2 121 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 BCL2P10415 239 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 BLOC1S1P78537 153 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 ZNF415Q09FC8 603 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 TMEM88Q6PEY1 159 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 LINC00476Q8WZB0 136 aa9.98□□□□□ -0.81
SHKBP1-217ENST00000598558 TRGV11A0A075B6L2 103 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 RAB19A4D1S5 217 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 FABP5P3A8MUU1 101 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 F5H768 121 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 SH2D1AO60880 128 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 ATP5G1P05496 136 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 RPL35P42766 123 aaKnown RBP9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 MEF2BQ02080 365 aaPredicted RBP9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 ZNF674Q2M3X9 581 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 BAGE2Q86Y30 109 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 POM121L12Q8N7R1 296 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 SDF2L1Q9HCN8 221 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 HYDINQ4G0P3 5121 aa9.97□□□□□ -0.81
SHKBP1-217ENST00000598558 IGLV2-8P01709 118 aa9.96□□□□□ -0.82
SHKBP1-217ENST00000598558 RNASE3P12724 160 aaKnown RBP9.96□□□□□ -0.82
SHKBP1-217ENST00000598558 TEX261Q6UWH6 196 aa9.96□□□□□ -0.82
SHKBP1-217ENST00000598558 KCNS1Q96KK3 526 aa9.96□□□□□ -0.82
SHKBP1-217ENST00000598558 VAX2Q9UIW0 290 aa9.96□□□□□ -0.82
SHKBP1-217ENST00000598558 TRBV20OR9-2A0A075B6H5 130 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 KRBOX1C9JBD0 128 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 LY6G6CO95867 125 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 IGHV3-53P01767 116 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 S100A9P06702 114 aaKnown RBP9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 LGALS9BQ3B8N2 356 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 C9orf85Q96MD7 179 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 C18orf15Q96N68 181 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 TXNDC17Q9BRA2 123 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 SPXQ9BT56 116 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 VPS13DQ5THJ4 4388 aa9.95□□□□□ -0.82
SHKBP1-217ENST00000598558 TRGV2A0A075B6R0 118 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 GRIFINA4D1Z8 144 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 RBFOX3A6NFN3 312 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 M0R036 132 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 IFNA1P01562 189 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 ORM1P02763 201 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 TCTAP57738 103 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 FAM162BQ5T6X4 162 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 RASL10AQ92737 203 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 FAM210BQ96KR6 192 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 NDUFAF3Q9BU61 184 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 MED9Q9NWA0 146 aa9.94□□□□□ -0.82
SHKBP1-217ENST00000598558 TMSB15BA0A087X1C1 80 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 PGPEP1LA6NFU8 196 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 PDE6DO43924 150 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 SFTA3P0C7M3 94 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 RPL19P84098 196 aaKnown RBP9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 OR5I1Q13606 314 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 CENPWQ5EE01 88 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 ZNF506Q5JVG8 444 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 LGALS9CQ6DKI2 356 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 VSIG2Q96IQ7 327 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 ZNF479Q96JC4 524 aa9.93□□□□□ -0.82
SHKBP1-217ENST00000598558 TRAV26-1A0A087WT03 109 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 A0A0J9YY99 117 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 B4DEV8 164 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 M0R2P5 195 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 FHL2Q14192 279 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 LINC01559Q495D7 138 aa9.92□□□□□ -0.82
SHKBP1-217ENST00000598558 C9JCJ5 164 aa9.91□□□□□ -0.82
SHKBP1-217ENST00000598558 TOR2AQ5JU69 321 aa9.91□□□□□ -0.82
SHKBP1-217ENST00000598558 PRR27Q6MZM9 219 aa9.91□□□□□ -0.82
SHKBP1-217ENST00000598558 ARMS2P0C7Q2 107 aa9.9□□□□□ -0.82
SHKBP1-217ENST00000598558 TAGLN2P37802 199 aaKnown RBP9.9□□□□□ -0.82
SHKBP1-217ENST00000598558 DNLZQ5SXM8 178 aa9.9□□□□□ -0.82
SHKBP1-217ENST00000598558 FAM210AQ96ND0 272 aa9.9□□□□□ -0.82
SHKBP1-217ENST00000598558 C9JQL5 133 aa9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 H3BVH4 76 aa9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 NUDT3O95989 172 aa9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 ASIPP42127 132 aa9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 SRSF3P84103 164 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-217ENST00000598558 ZNF876PQ49A33 203 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms