RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 RNF222A6NCQ9 220 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 GGTLC3B5MD39 225 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 SIVA1O15304 175 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 GIPP09681 153 aaPredicted RBP7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 KRTAP10-2P60368 255 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 ZNF726P1Q15940 193 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 LYPD5Q6UWN5 251 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 INO80EQ8NBZ0 244 aaPredicted RBP7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 OR2T35Q8NGX2 323 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 PCNPQ8WW12 178 aaKnown RBP7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 ACTR3CQ9C0K3 210 aaPredicted RBP7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 SDF2L1Q9HCN8 221 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 PSG8Q9UQ74 426 aa7.06□□□□□ -1.28
SHKBP1-210ENST00000595874 H3BNG1 76 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 K7EQD1 137 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 GCGP01275 180 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 IFNA7P01567 189 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 TCRAP04437 139 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 SRIP30626 198 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 TTC32Q5I0X7 151 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 DPPA3Q6W0C5 159 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 NHLRC2Q8NBF2 726 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 ASB13Q8WXK3 278 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 NDFIP1Q9BT67 221 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 UPK3BQ9BT76 320 aa7.05□□□□□ -1.28
SHKBP1-210ENST00000595874 BORCS7-ASMTA0A0B4J1R7 106 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 PGPEP1LA6NFU8 196 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 ARPC5O15511 151 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 CXorf1O96002 111 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 DNAH10OSP0CZ25 163 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 MRPL23Q16540 153 aaKnown RBP7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 NEGR1Q7Z3B1 354 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 C5orf17Q8NAS9 161 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 C18orf15Q96N68 181 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 SPXQ9BT56 116 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 PSMG3Q9BT73 122 aaPredicted RBP7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 EPDR1Q9UM22 224 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 TNFSF18Q9UNG2 199 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 LENEPQ9Y5L5 61 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 ABCA13Q86UQ4 5058 aa7.04□□□□□ -1.28
SHKBP1-210ENST00000595874 MUC4Q99102 2169 aa7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 TRAV4A0A0B4J268 109 aa7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 TRBV7-9A0A0J9YWB2 115 aa7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 M0R2P5 195 aa7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 FLI1Q01543 452 aaPredicted RBP7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 AKR1C8PQ5T2L2 129 aa7.03□□□□□ -1.28
SHKBP1-210ENST00000595874 TMSB15BA0A087X1C1 80 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 GRIFINA4D1Z8 144 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 G3V3Q6 166 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 K7EQM0 130 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 IGLV2-11P01706 119 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 MBP02144 154 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 PPT1P50897 306 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 RGS21Q2M5E4 152 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 ZNF876PQ49A33 203 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 ZFP69Q49AA0 526 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 SMUG1Q53HV7 270 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 CYB561D1Q8N8Q1 229 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 TMED6Q8WW62 240 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 RASL10AQ92737 203 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 TMEM167BQ9NRX6 74 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 ARL2-SNX15V9GYD0 113 aa7.02□□□□□ -1.29
SHKBP1-210ENST00000595874 CTXND1A0A1B0GTU2 59 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 FBLL1A6NHQ2 334 aaKnown RBP7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 M0R036 132 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 IGHV3-30P01768 117 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 IGHV3-33P01772 117 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 IGHV3-30-3P0DP02 117 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 IGHV3-30-5P0DP03 117 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 FHITP49789 147 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 SERF2P84101 59 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 SLAQ13239 276 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 ZNF506Q5JVG8 444 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 MAPKAPK5-AS1Q8N8E1 139 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 SUN5Q8TC36 379 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 KCNS1Q96KK3 526 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 JPT2Q9H910 190 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 LY96Q9Y6Y9 160 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 LRP1BQ9NZR2 4599 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 HSPG2P98160 4391 aa7.01□□□□□ -1.29
SHKBP1-210ENST00000595874 DNAH5Q8TE73 4624 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 MAP1LC3B2A6NCE7 125 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 GAGE12JA6NER3 117 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 PEX7O00628 323 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 TAAR5O14804 337 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 RS1O15537 224 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 S100A4P26447 101 aaKnown RBP7□□□□□ -1.29
SHKBP1-210ENST00000595874 GAGE1Q13065 139 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 GAGE4Q13068 117 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 GAGE5Q13069 117 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 TDRG1Q3Y452 100 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 LGALSLQ3ZCW2 172 aaPredicted RBP7□□□□□ -1.29
SHKBP1-210ENST00000595874 GAGE13Q4V321 117 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 CFAP126Q5VTH2 177 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 Q6ZRN7 208 aaPredicted RBP7□□□□□ -1.29
SHKBP1-210ENST00000595874 Q86TA4 180 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 SLC25A29Q8N8R3 303 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 MAP1LC3BQ9GZQ8 125 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 Q9HAA7 133 aa7□□□□□ -1.29
SHKBP1-210ENST00000595874 CYTL1Q9NRR1 136 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms