RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 SORL1Q92673 2214 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 TRBV20OR9-2A0A075B6H5 130 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 TRAV12-2A0A075B6T6 113 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 TRAV12-3A0A0B4J271 114 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 TRBV7-9A0A0J9YWB2 115 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1BA6NDE4 496 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1EA6NEQ0 496 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 GAGE10A6NGK3 116 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 A8MZ25 164 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 M0R036 132 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 CA1P00915 261 aaPredicted RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 GCGP01275 180 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 INSP01308 110 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 APOC3P02656 99 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 AMBPP02760 352 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 PRB2P02812 416 aaPredicted RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 RBMY1DP0C7P1 496 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 IGHV4-30-4P0DP06 118 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 CRISP2P16562 243 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 ADCYAP1P18509 176 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 APOC4P55056 127 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 ERVFC1-1P60608 527 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 RPL23P62829 140 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 PNRC1Q12796 327 aaPredicted RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 BTN1A1Q13410 526 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 DEFB121Q5J5C9 76 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 FAM162BQ5T6X4 162 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 KPRPQ5T749 579 aaPredicted RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 GFI1BQ5VTD9 330 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 MORN3Q6PF18 240 aaPredicted RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 AMTNQ6UX39 209 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 LINC01551Q86U37 167 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 OCC1Q8TAD7 63 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 DAZAP1Q96EP5 407 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 ZC2HC1AQ96GY0 325 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 FAM19A4Q96LR4 140 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 TMEM208Q9BTX3 173 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 C1QTNF4Q9BXJ3 329 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 CSTL1Q9H114 145 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 XCL2Q9UBD3 114 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 NAGKQ9UJ70 344 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 CHTOPQ9Y3Y2 248 aaKnown RBP3.89□□□□□ -1.79
LIG3-210ENST00000588109 COX11Q9Y6N1 276 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 LY96Q9Y6Y9 160 aa3.89□□□□□ -1.79
LIG3-210ENST00000588109 IGHV3OR16-12A0A075B7B8 117 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 TRAV21A0A0B4J279 112 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 C7orf71A4D174 169 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 A8MTW9 85 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 FABP5P3A8MUU1 101 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 KLLNB2CW77 178 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 K7EN84 100 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 SH2D1AO60880 128 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 ATP6V1G1O75348 118 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 IGLV2-8P01709 118 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 P01737 135 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 PFN1P07737 140 aaKnown RBP3.88□□□□□ -1.79
LIG3-210ENST00000588109 OR5I1Q13606 314 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 IBA57Q5T440 356 aaKnown RBP3.88□□□□□ -1.79
LIG3-210ENST00000588109 PRR9Q5T870 116 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 SVBPQ8N300 66 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 ZFAND2AQ8N6M9 145 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 C15orf54Q8N8G6 183 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 ISOC2Q96AB3 205 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 SDF2L1Q9HCN8 221 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 CARHSP1Q9Y2V2 147 aaKnown RBP3.88□□□□□ -1.79
LIG3-210ENST00000588109 GOLT1BQ9Y3E0 138 aa3.88□□□□□ -1.79
LIG3-210ENST00000588109 AGRNO00468 2067 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 TMSB15BA0A087X1C1 80 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 KIR2DL5BA0A0G2JN68 375 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 KIR2DL5BA0A0G2JPC4 375 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 TMEM189A5PLL7 270 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 ZNF705GA8MUZ8 300 aaPredicted RBP3.87□□□□□ -1.79
LIG3-210ENST00000588109 K7EIL1 84 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 GATCO43716 136 aaKnown RBP3.87□□□□□ -1.79
LIG3-210ENST00000588109 SNAPINO95295 136 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 ORM1P02763 201 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 MT-ND4LP03901 98 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 FRMD6-AS1P0C7T7 363 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 HTN1P15515 57 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 CRIP1P50238 77 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 ZNF80P51504 273 aaPredicted RBP3.87□□□□□ -1.79
LIG3-210ENST00000588109 MUC21Q5SSG8 566 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 C10orf91Q5T1B1 145 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 Q6AWC8 147 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 SUMO4Q6EEV6 95 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 FAM159AQ6UWV7 190 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 COX8CQ7Z4L0 72 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 KIR2DL5AQ8N109 375 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 OR10G8Q8NGN5 311 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 KIR2DL5BQ8NHK3 375 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 SFRP2Q96HF1 295 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 LINC01587Q99440 93 aa3.87□□□□□ -1.79
LIG3-210ENST00000588109 RNASE7Q9H1E1 156 aaKnown RBP3.87□□□□□ -1.79
LIG3-210ENST00000588109 IGHV1OR15-1A0A075B7D0 117 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 XKRY2A2RUG3 117 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 CBY3A6NI87 242 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 B4DEV8 164 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 H7BYZ3 331 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 PPP1R2P9O14990 202 aa3.86□□□□□ -1.79
LIG3-210ENST00000588109 CRXO43186 299 aaPredicted RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms