RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SH3BGRL3Q9H299 93 aa13.99□□□□□ -0.17
SHMT1-209ENST00000582653 TRAV21A0A0B4J279 112 aa13.98□□□□□ -0.17
SHMT1-209ENST00000582653 K7EQD1 137 aa13.98□□□□□ -0.17
SHMT1-209ENST00000582653 Q6ZRN7 208 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-209ENST00000582653 NEGR1Q7Z3B1 354 aa13.98□□□□□ -0.17
SHMT1-209ENST00000582653 IQCF2Q8IXL9 164 aa13.98□□□□□ -0.17
SHMT1-209ENST00000582653 PSMG3Q9BT73 122 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-209ENST00000582653 TYMSP04818 313 aa13.97□□□□□ -0.17
SHMT1-209ENST00000582653 GCHFRP30047 84 aa13.97□□□□□ -0.17
SHMT1-209ENST00000582653 Q8N1X5 172 aa13.97□□□□□ -0.17
SHMT1-209ENST00000582653 TNFRSF18Q9Y5U5 241 aa13.97□□□□□ -0.17
SHMT1-209ENST00000582653 M0R2P5 195 aa13.96□□□□□ -0.17
SHMT1-209ENST00000582653 TCRAP04437 139 aa13.96□□□□□ -0.17
SHMT1-209ENST00000582653 GYPEP15421 78 aa13.96□□□□□ -0.17
SHMT1-209ENST00000582653 SUN5Q8TC36 379 aa13.96□□□□□ -0.17
SHMT1-209ENST00000582653 SRIP30626 198 aa13.95□□□□□ -0.18
SHMT1-209ENST00000582653 ZNF80P51504 273 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-209ENST00000582653 SUMO1P63165 101 aaKnown RBP13.95□□□□□ -0.18
SHMT1-209ENST00000582653 OR4C5Q8NGB2 326 aa13.95□□□□□ -0.18
SHMT1-209ENST00000582653 SDF2L1Q9HCN8 221 aa13.95□□□□□ -0.18
SHMT1-209ENST00000582653 TRAV4A0A0B4J268 109 aa13.94□□□□□ -0.18
SHMT1-209ENST00000582653 SERF2P84101 59 aa13.94□□□□□ -0.18
SHMT1-209ENST00000582653 C5orf17Q8NAS9 161 aa13.94□□□□□ -0.18
SHMT1-209ENST00000582653 PCNPQ8WW12 178 aaKnown RBP13.94□□□□□ -0.18
SHMT1-209ENST00000582653 PGPEP1Q9NXJ5 209 aa13.94□□□□□ -0.18
SHMT1-209ENST00000582653 C11orf21Q9P2W6 132 aa13.94□□□□□ -0.18
SHMT1-209ENST00000582653 LOC100131303A0A0U1RQF7 123 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 RNF222A6NCQ9 220 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 MBP02144 154 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 GIPP09681 153 aaPredicted RBP13.93□□□□□ -0.18
SHMT1-209ENST00000582653 RPL7L1Q6DKI1 246 aaKnown RBP13.93□□□□□ -0.18
SHMT1-209ENST00000582653 ASB13Q8WXK3 278 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 KCNS1Q96KK3 526 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 NDFIP1Q9BT67 221 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 ACTR3CQ9C0K3 210 aaPredicted RBP13.93□□□□□ -0.18
SHMT1-209ENST00000582653 SCRT2Q9NQ03 307 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 PSG8Q9UQ74 426 aa13.93□□□□□ -0.18
SHMT1-209ENST00000582653 TRAV9-2A0A087WT02 112 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 SERTM2A0A1B0GWG4 89 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 GGTLC3B5MD39 225 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 C9JCJ5 164 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 CXorf1O96002 111 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 IGLV2-11P01706 119 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 ORM1P02763 201 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 WFDC10BQ8IUB3 73 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 INO80EQ8NBZ0 244 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-209ENST00000582653 EPDR1Q9UM22 224 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 TNFSF18Q9UNG2 199 aa13.92□□□□□ -0.18
SHMT1-209ENST00000582653 FXYD6-FXYD2A0A087WZ82 144 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 K7EP13 123 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 GCGP01275 180 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 PRNTQ86SH4 94 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 NFE4Q86UQ8 179 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 TMEM75Q8N9X5 138 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 TMEM167BQ9NRX6 74 aa13.91□□□□□ -0.18
SHMT1-209ENST00000582653 K7EQM0 130 aa13.9□□□□□ -0.18
SHMT1-209ENST00000582653 EREGO14944 169 aa13.9□□□□□ -0.18
SHMT1-209ENST00000582653 FUSP35637 526 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHMT1-209ENST00000582653 FLI1Q01543 452 aaPredicted RBP13.9□□□□□ -0.18
SHMT1-209ENST00000582653 ZNF726P1Q15940 193 aa13.9□□□□□ -0.18
SHMT1-209ENST00000582653 LY96Q9Y6Y9 160 aa13.9□□□□□ -0.18
SHMT1-209ENST00000582653 TAAR5O14804 337 aa13.89□□□□□ -0.19
SHMT1-209ENST00000582653 ZNF876PQ49A33 203 aa13.89□□□□□ -0.19
SHMT1-209ENST00000582653 DPPA3Q6W0C5 159 aa13.89□□□□□ -0.19
SHMT1-209ENST00000582653 LINC00479Q96M42 142 aa13.89□□□□□ -0.19
SHMT1-209ENST00000582653 GATA1P15976 413 aaPredicted RBP13.88□□□□□ -0.19
SHMT1-209ENST00000582653 CYB561D1Q8N8Q1 229 aa13.88□□□□□ -0.19
SHMT1-209ENST00000582653 OR2T35Q8NGX2 323 aa13.88□□□□□ -0.19
SHMT1-209ENST00000582653 TXNDC17Q9BRA2 123 aa13.88□□□□□ -0.19
SHMT1-209ENST00000582653 BORCS7-ASMTA0A0B4J1R7 106 aa13.87□□□□□ -0.19
SHMT1-209ENST00000582653 TRAV34A0A0B4J273 112 aa13.87□□□□□ -0.19
SHMT1-209ENST00000582653 PFN1P07737 140 aaKnown RBP13.87□□□□□ -0.19
SHMT1-209ENST00000582653 ERVFC1-1P60608 527 aa13.87□□□□□ -0.19
SHMT1-209ENST00000582653 SMUG1Q53HV7 270 aa13.87□□□□□ -0.19
SHMT1-209ENST00000582653 IGHV3-73A0A0B4J1V6 119 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 A0A1W2PRE2 83 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 PGPEP1LA6NFU8 196 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 G3V3Q6 166 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 UBE2G2P60604 165 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 CFAP126Q5VTH2 177 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 NHLRC2Q8NBF2 726 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 C9orf85Q96MD7 179 aa13.86□□□□□ -0.19
SHMT1-209ENST00000582653 FBLL1A6NHQ2 334 aaKnown RBP13.85□□□□□ -0.19
SHMT1-209ENST00000582653 RS1O15537 224 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 DNAH10OSP0CZ25 163 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 EVI2AP22794 236 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 ZFP69Q49AA0 526 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 CDPF1Q6NVV7 123 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 SLC25A29Q8N8R3 303 aa13.85□□□□□ -0.19
SHMT1-209ENST00000582653 A0A087WTM6 91 aa13.84□□□□□ -0.19
SHMT1-209ENST00000582653 CTXND1A0A1B0GTU2 59 aa13.84□□□□□ -0.19
SHMT1-209ENST00000582653 IFNA7P01567 189 aa13.84□□□□□ -0.19
SHMT1-209ENST00000582653 RNASE3P12724 160 aaKnown RBP13.84□□□□□ -0.19
SHMT1-209ENST00000582653 FGF8P55075 233 aaPredicted RBP13.84□□□□□ -0.19
SHMT1-209ENST00000582653 SAPCD1Q5SSQ6 148 aa13.84□□□□□ -0.19
SHMT1-209ENST00000582653 MSRB1Q9NZV6 116 aa13.84□□□□□ -0.19
SHMT1-209ENST00000582653 ZNF506Q5JVG8 444 aa13.83□□□□□ -0.2
SHMT1-209ENST00000582653 SH2D6Q7Z4S9 175 aa13.83□□□□□ -0.2
SHMT1-209ENST00000582653 ARL2-SNX15V9GYD0 113 aa13.83□□□□□ -0.2
SHMT1-209ENST00000582653 IGKV3D-20A0A0C4DH25 116 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms