RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 ZNF345Q14585 488 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 HMGN3Q15651 99 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 RPL7L1Q6DKI1 246 aaKnown RBP3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 FAM213BQ8TBF2 198 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 CACFD1Q9UGQ2 172 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 MON2Q7Z3U7 1717 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 ADGRB3O60242 1522 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 EPRSP07814 1512 aaKnown RBP3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 ANKRD12Q6UB98 2062 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 TANC2Q9HCD6 1990 aa3.18□□□□□ -1.9
TOPBP1-210ENST00000572787 TDRD6O60522 2096 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 HMSDA8MTL9 139 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 NUPR1O60356 82 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 ZNF861PO60384 105 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 CFDP00746 253 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 IGLC2P0DOY2 106 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 IGLC3P0DOY3 106 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 MIFP14174 115 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 HINT1P49773 126 aaPredicted RBP3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 KRTAP24-1Q3LI83 254 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 S100A7L2Q5SY68 101 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 SERP2Q8N6R1 65 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 OR10AG1Q8NH19 301 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 TMEM254Q8TBM7 123 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 C20orf166-AS1Q96NR2 134 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 OR8B2Q96RD0 313 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 TRGV9Q99603 122 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 CYTL1Q9NRR1 136 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 MINOS1-NBL1R4GNA1 71 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 SCN9AQ15858 1988 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 TNRC6AQ8NDV7 1962 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 PLXNA3P51805 1871 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 NYNRINQ9P2P1 1898 aaKnown RBP3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 PTPRSQ13332 1948 aa3.17□□□□□ -1.9
TOPBP1-210ENST00000572787 PLXNB1O43157 2135 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 IGKV1D-17A0A075B6S4 117 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 A0A1W2PPM0 123 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 A6NIN4 97 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 NDUFC1O43677 76 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 MRPS21P82921 87 aaKnown RBP3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 SLC48A1Q6P1K1 146 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 LYPD6Q86Y78 171 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 C9orf106Q8NAJ2 232 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 SMAD5-AS1Q9Y6J3 95 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 HFM1A2PYH4 1435 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 GOLGA3Q08378 1498 aa3.16□□□□□ -1.9
TOPBP1-210ENST00000572787 TMEM131LA2VDJ0 1609 aa3.15□□□□□ -1.9
TOPBP1-210ENST00000572787 MYLKQ15746 1914 aa3.15□□□□□ -1.9
TOPBP1-210ENST00000572787 ABCC2Q92887 1545 aa3.15□□□□□ -1.9
TOPBP1-210ENST00000572787 ZNF407Q9C0G0 2248 aa3.15□□□□□ -1.9
TOPBP1-210ENST00000572787 GNG11P61952 73 aa3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 SUPT6HQ7KZ85 1726 aaKnown RBP3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 WDR90Q96KV7 1748 aa3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 PEAK1Q9H792 1746 aa3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 ANK1P16157 1881 aa3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 KIF14Q15058 1648 aa3.15□□□□□ -1.91
TOPBP1-210ENST00000572787 ZFC3H1O60293 1989 aaKnown RBP3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 UGGT2Q9NYU1 1516 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 CHD3Q12873 2000 aaKnown RBP3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 IGHV3OR16-8A0A075B7F1 116 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 ERC2-IT1O76042 136 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 WISP3O95389 354 aaPredicted RBP3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 UBE2G1P62253 170 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 EIF4EBP1Q13541 118 aaPredicted RBP3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 C9orf116Q5BN46 136 aaPredicted RBP3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 BVES-AS1Q5T3Y7 98 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 OR8B3Q8NGG8 313 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 CYP4F30PQ9H0H9 118 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 S4R3C0 116 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 MYH8P13535 1937 aa3.14□□□□□ -1.91
TOPBP1-210ENST00000572787 RGPD4Q7Z3J3 1758 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 MAP3K4Q9Y6R4 1608 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 TRAV17A0A0B4J275 112 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 TRBV10-3A0A0K0K1G6 114 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 CRYM-AS1A6NIL9 109 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 CCL16O15467 120 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 HEPN1Q6WQI6 88 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 AMELYQ99218 206 aa3.13□□□□□ -1.91
TOPBP1-210ENST00000572787 PTPN23Q9H3S7 1636 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 DOCK1Q14185 1865 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 ATP10BO94823 1461 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 TRAV10A0A0B4J240 114 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 A0A0J9YX75 114 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 KANTRA0A1W2PQU2 76 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 TCRBV4S1A1TA0A5B7 111 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 SYS1-DBNDD2H3BUS1 97 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 PSCAO43653 123 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 RNASE2P10153 161 aaKnown RBP3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 GTF3C1Q12789 2109 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 ETDBQ3ZM63 59 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 C2orf82Q6UX34 121 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 NDUFB11Q9NX14 153 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 GREB1Q4ZG55 1949 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 CFAP74Q9C0B2 1584 aa3.12□□□□□ -1.91
TOPBP1-210ENST00000572787 MROH1Q8NDA8 1641 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 BLMP54132 1417 aaPredicted RBP3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 MEGF6O75095 1541 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 DISP1Q96F81 1524 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 TRAV13-2A0A0B4J235 113 aa3.11□□□□□ -1.91
TOPBP1-210ENST00000572787 ODF3BA8MYP8 253 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 166.2 ms