RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 C12orf74Q32Q52 190 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 KLK9Q9UKQ9 250 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 SLC25A16P16260 332 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 TCF15Q12870 199 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 LINC00477Q96M19 166 aa8.25□□□□□ -1.09
CCDC40-207ENST00000572253 TRAV21A0A0B4J279 112 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 TEX48A0A1B0GUV7 120 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 ASIPP42127 132 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 SMAGPQ0VAQ4 97 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 PHLDA1Q8WV24 401 aaPredicted RBP8.24□□□□□ -1.09
CCDC40-207ENST00000572253 KLK15Q9H2R5 256 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 J3KRW8 73 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 M0R381 172 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 SAA4P35542 130 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 FOXI2Q6ZQN5 318 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 C20orf78Q9BR46 151 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 DPH3P1Q9H4G8 78 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 K7EMI3 77 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 SUMO2P61956 95 aaKnown RBP8.24□□□□□ -1.09
CCDC40-207ENST00000572253 MAPKAPK5-AS1Q8N8E1 139 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 PHLDA3Q9Y5J5 127 aa8.24□□□□□ -1.09
CCDC40-207ENST00000572253 OVOL1O14753 267 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 PPP1R17O96001 155 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 ATP6V0BQ99437 205 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 CITED1Q99966 193 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 RAXQ9Y2V3 346 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 FAM208BQ5VWN6 2430 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 MYMXA0A1B0GTQ4 84 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 MGPP08493 103 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 CFAP47Q6ZTR5 3102 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 FAM223BA6NKX1 122 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 FAM223AQ8IWN6 122 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 U3KQE9 123 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 NOTCH2Q04721 2471 aa8.23□□□□□ -1.09
CCDC40-207ENST00000572253 CENPVL3A0A0U1RRI6 287 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 TMEM238LA0A1B0GVL6 79 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 A6NJY4 79 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 LINC01619G3V211 115 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 TOMM6Q96B49 74 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 SPENQ96T58 3664 aaKnown RBP8.22□□□□□ -1.09
CCDC40-207ENST00000572253 ACACBO00763 2458 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 TRAV41A0A0B4J266 112 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 RRN3P1Q2M238 152 aa8.22□□□□□ -1.09
CCDC40-207ENST00000572253 NPFFO15130 113 aa8.21□□□□□ -1.09
CCDC40-207ENST00000572253 ADORA2A-AS1P86434 159 aa8.21□□□□□ -1.09
CCDC40-207ENST00000572253 SIGMAR1Q99720 223 aa8.21□□□□□ -1.09
CCDC40-207ENST00000572253 GAGE13Q4V321 117 aa8.21□□□□□ -1.09
CCDC40-207ENST00000572253 GLMPQ8WWB7 406 aa8.21□□□□□ -1.09
CCDC40-207ENST00000572253 RPL11P62913 178 aaKnown RBP8.21□□□□□ -1.1
CCDC40-207ENST00000572253 SCGB1D4Q6XE38 83 aa8.21□□□□□ -1.1
CCDC40-207ENST00000572253 MOB4Q9Y3A3 225 aa8.21□□□□□ -1.1
CCDC40-207ENST00000572253 PTPRQQ9UMZ3 2332 aa8.21□□□□□ -1.1
CCDC40-207ENST00000572253 HOXA3O43365 443 aaPredicted RBP8.2□□□□□ -1.1
CCDC40-207ENST00000572253 KLRB1Q12918 225 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 C2orf66Q6UXQ4 117 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 C14orf178Q8N769 122 aaPredicted RBP8.2□□□□□ -1.1
CCDC40-207ENST00000572253 ADGRG4Q8IZF6 3080 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 ZFHX4Q86UP3 3567 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 LINC01548A6NM66 108 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 C5orf56Q8N8D9 126 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 UBTD1Q9HAC8 227 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 H3BMG7 143 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 MED14OSP0DP75 135 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 HERVK_113P61574 105 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 WFDC2Q14508 124 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 CYSLTR1Q9Y271 337 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 TRBV7-3A0A075B6L6 115 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 NBL1P41271 181 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 CD300EQ496F6 205 aaPredicted RBP8.2□□□□□ -1.1
CCDC40-207ENST00000572253 NEXN-AS1Q8NBZ9 246 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 RASL10AQ92737 203 aa8.2□□□□□ -1.1
CCDC40-207ENST00000572253 SPANXB1Q9NS25 103 aaPredicted RBP8.2□□□□□ -1.1
CCDC40-207ENST00000572253 LINC01549A6NIU2 74 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 ZNF815PA8K554 130 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 RNASE4P34096 147 aaKnown RBP8.19□□□□□ -1.1
CCDC40-207ENST00000572253 SRSF9Q13242 221 aaKnown RBP eCLIP8.19□□□□□ -1.1
CCDC40-207ENST00000572253 PRR9Q5T870 116 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 Q6ZQT7 251 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 ITLN2Q8WWU7 325 aaPredicted RBP8.19□□□□□ -1.1
CCDC40-207ENST00000572253 ZNF292O60281 2723 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 AKAP13Q12802 2813 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 SCGB1A1P11684 91 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 CDSNQ15517 529 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 PAPPA-AS1Q5QFB9 102 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 PRADC1Q9BSG0 188 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 ANXA2RQ3ZCQ2 193 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 LYRM7Q5U5X0 104 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 MTURNQ8N3F0 131 aa8.19□□□□□ -1.1
CCDC40-207ENST00000572253 ZZEF1O43149 2961 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 NDUFA4O00483 81 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 ETDBQ3ZM63 59 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 TMEM219Q86XT9 240 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 ZFAND2AQ8N6M9 145 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 RPL39LQ96EH5 51 aaKnown RBP8.18□□□□□ -1.1
CCDC40-207ENST00000572253 C20orf173Q96LM9 149 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 GTSF1LQ9H1H1 148 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 MRPL16Q9NX20 251 aaKnown RBP8.18□□□□□ -1.1
CCDC40-207ENST00000572253 TSSC4Q9Y5U2 329 aaPredicted RBP8.18□□□□□ -1.1
CCDC40-207ENST00000572253 PRSS29PA6NIE9 313 aa8.18□□□□□ -1.1
CCDC40-207ENST00000572253 SCGB1C2P0DMR2 95 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms