RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 NPIPB6E9PJ23 425 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 PDE6DO43924 150 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 MT-CO2P00403 227 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 MT-ND4LP03901 98 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 ARL14EPLP0DKL9 152 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 HERV-K104P63124 156 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 CBLN2Q8IUK8 224 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 FAM24BQ8N5W8 94 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 OR1L4Q8NGR5 311 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 OR4X1Q8NH49 305 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 TMEM37Q8WXS4 190 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 C11orf52Q96A22 123 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 FAM167A-AS1Q96KT0 104 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 RHPN1-AS1Q9BWJ2 59 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 RPS10P5Q9NQ39 176 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 TMEM167BQ9NRX6 74 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 MRPL36Q9P0J6 103 aaKnown RBP4.75□□□□□ -1.65
CHD3-213ENST00000571249 PRELID1Q9Y255 219 aa4.75□□□□□ -1.65
CHD3-213ENST00000571249 PUS1Q9Y606 427 aaKnown RBP eCLIP4.75□□□□□ -1.65
CHD3-213ENST00000571249 IGLV11-55A0A075B6I3 123 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 A0A087WTM6 91 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 TEX48A0A1B0GUV7 120 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 SERTM2A0A1B0GWG4 89 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 A0A1W2PRE2 83 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 ZNF727A8MUV8 499 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 K7EIM0 57 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 K7EMT4 169 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 M0R036 132 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 HMGB3O15347 200 aaKnown RBP4.74□□□□□ -1.65
CHD3-213ENST00000571249 NUPL2O15504 423 aaKnown RBP4.74□□□□□ -1.65
CHD3-213ENST00000571249 DEFA4P12838 97 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 NPPCP23582 126 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 HNRNPA3P51991 378 aaKnown RBP4.74□□□□□ -1.65
CHD3-213ENST00000571249 RND2P52198 227 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 TAS2R45P59539 299 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 SEC61BP60468 96 aaKnown RBP4.74□□□□□ -1.65
CHD3-213ENST00000571249 PAFAH1B2P68402 229 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 TMEM241Q24JQ0 296 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 FAM78BQ5VT40 261 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 SPATA31B1PQ5VZV4 182 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 PATE2Q6UY27 113 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 MIR17HGQ75NE6 70 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 ZNF502Q8TBZ5 544 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 HIST1H2BAQ96A08 127 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 ACY3Q96HD9 319 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 LY96Q9Y6Y9 160 aa4.74□□□□□ -1.65
CHD3-213ENST00000571249 IGHV3OR16-13A0A075B7E8 117 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 IGHV3-74A0A0B4J1X5 117 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 IGHV7-4-1A0A0J9YVY3 117 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 C9JCJ5 164 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 NDUFA4O00483 81 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 EIF3GO75821 320 aaKnown RBP eCLIP4.73□□□□□ -1.65
CHD3-213ENST00000571249 S100A9P06702 114 aaKnown RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 IGLC1P0CG04 106 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 HIST1H1BP16401 226 aaKnown RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 GATA2P23769 480 aaPredicted RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 RPL23P62829 140 aaKnown RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 ZNF90Q03938 601 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 Q75L30 129 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 STXBP6Q8NFX7 210 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 SMIM7Q9BQ49 75 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 TCEAL7Q9BRU2 100 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 PARLQ9H300 379 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 XCL2Q9UBD3 114 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 YTHDF2Q9Y5A9 579 aaKnown RBP4.73□□□□□ -1.65
CHD3-213ENST00000571249 TNFRSF18Q9Y5U5 241 aa4.73□□□□□ -1.65
CHD3-213ENST00000571249 TRAV30A0A087WSZ9 112 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 OR2T8A6NH00 312 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 COX7A2P2O60397 106 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 HYPMO75409 117 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 IGKV1-17P01599 117 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 FABP1P07148 127 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 ATP5G3P48201 142 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 YPEL3P61236 119 aaPredicted RBP4.72□□□□□ -1.65
CHD3-213ENST00000571249 DAD1P61803 113 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 FLI1Q01543 452 aaPredicted RBP4.72□□□□□ -1.65
CHD3-213ENST00000571249 ZNF415Q09FC8 603 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 ACTL10Q5JWF8 245 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 C10orf113Q5VZT2 155 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 SUMO4Q6EEV6 95 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 TCF24Q7RTU0 167 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 OR51G1Q8NGK1 321 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 VN1R17PQ8TDU5 208 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 RPUSD4Q96CM3 377 aaKnown RBP4.72□□□□□ -1.65
CHD3-213ENST00000571249 FXYD5Q96DB9 178 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 UHRF2Q96PU4 802 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 PYGO2Q9BRQ0 406 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 ALKBH7Q9BT30 221 aaPredicted RBP4.72□□□□□ -1.65
CHD3-213ENST00000571249 SLC25A2Q9BXI2 301 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 MS4A6AQ9H2W1 248 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 TMEM14CQ9P0S9 112 aa4.72□□□□□ -1.65
CHD3-213ENST00000571249 TRBV24-1A0A075B6N3 115 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 IGHV3OR16-12A0A075B7B8 117 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 IGLV5-52A0A0A0MRZ9 124 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 SMIM9A6NGZ8 99 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 TOMM40O96008 361 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 PFN1P07737 140 aaKnown RBP4.71□□□□□ -1.66
CHD3-213ENST00000571249 RAB5AP20339 215 aa4.71□□□□□ -1.66
CHD3-213ENST00000571249 AKR1C3P42330 323 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms