RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 NDUFS6O75380 124 aaKnown RBP15.62■□□□□ 0.09
CLN3-234ENST00000568472 TCTAP57738 103 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 LGALS9BQ3B8N2 356 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 FAM162BQ5T6X4 162 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 ZNF767PQ75MW2 155 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 LINC00612Q8N6U2 182 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 SPXQ9BT56 116 aa15.62■□□□□ 0.09
CLN3-234ENST00000568472 ZC2HC1AQ96GY0 325 aa15.61■□□□□ 0.09
CLN3-234ENST00000568472 MLST8Q9BVC4 326 aa15.61■□□□□ 0.09
CLN3-234ENST00000568472 MED9Q9NWA0 146 aa15.61■□□□□ 0.09
CLN3-234ENST00000568472 ZNF674Q2M3X9 581 aa15.6■□□□□ 0.09
CLN3-234ENST00000568472 ZNF506Q5JVG8 444 aa15.6■□□□□ 0.09
CLN3-234ENST00000568472 SMIM12Q96EX1 92 aa15.6■□□□□ 0.09
CLN3-234ENST00000568472 FAM210BQ96KR6 192 aa15.6■□□□□ 0.09
CLN3-234ENST00000568472 TMEM250H0YL14 139 aa15.59■□□□□ 0.09
CLN3-234ENST00000568472 SPINK4O60575 86 aa15.59■□□□□ 0.09
CLN3-234ENST00000568472 C18orf15Q96N68 181 aa15.59■□□□□ 0.09
CLN3-234ENST00000568472 MDFICQ9P1T7 246 aa15.59■□□□□ 0.09
CLN3-234ENST00000568472 IGHV3-16A0A0C4DH30 117 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 GNRH2O43555 120 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 TYMSP04818 313 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 ATP5G1P05496 136 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 CRIP1P50238 77 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 FAM210AQ96ND0 272 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 EIF5A2Q9GZV4 153 aaKnown RBP15.58■□□□□ 0.08
CLN3-234ENST00000568472 C11orf21Q9P2W6 132 aa15.58■□□□□ 0.08
CLN3-234ENST00000568472 TRGV1A0A0A0MS02 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GAGE12BA1L429 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 SH2D1AO60880 128 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GAGE7O76087 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 ORM1P02763 201 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GAGE12FP0CL80 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GAGE12GP0CL81 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GAGE12IP0CL82 117 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 GNG4P50150 75 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 DERL1Q9BUN8 251 aa15.57■□□□□ 0.08
CLN3-234ENST00000568472 CENPWQ5EE01 88 aa15.56■□□□□ 0.08
CLN3-234ENST00000568472 Q6ZTI0 123 aa15.56■□□□□ 0.08
CLN3-234ENST00000568472 BIN3Q9NQY0 253 aa15.56■□□□□ 0.08
CLN3-234ENST00000568472 CSMD3Q7Z407 3707 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 TRGV2A0A075B6R0 118 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 B4DEV8 164 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 IGLL5B9A064 214 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 TOR2AQ5JU69 321 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 NHLRC2Q8NBF2 726 aa15.55■□□□□ 0.08
CLN3-234ENST00000568472 IGKV3D-20A0A0C4DH25 116 aa15.54■□□□□ 0.08
CLN3-234ENST00000568472 M0R2P5 195 aa15.54■□□□□ 0.08
CLN3-234ENST00000568472 HTN3P15516 51 aa15.54■□□□□ 0.08
CLN3-234ENST00000568472 RAB14P61106 215 aa15.54■□□□□ 0.08
CLN3-234ENST00000568472 RASL10AQ92737 203 aa15.54■□□□□ 0.08
CLN3-234ENST00000568472 RAB19A4D1S5 217 aa15.53■□□□□ 0.08
CLN3-234ENST00000568472 KRBOX1C9JBD0 128 aa15.53■□□□□ 0.08
CLN3-234ENST00000568472 LINC01559Q495D7 138 aa15.53■□□□□ 0.08
CLN3-234ENST00000568472 DNLZQ5SXM8 178 aa15.53■□□□□ 0.08
CLN3-234ENST00000568472 NDUFAF3Q9BU61 184 aa15.53■□□□□ 0.08
CLN3-234ENST00000568472 S100A4P26447 101 aaKnown RBP15.52■□□□□ 0.08
CLN3-234ENST00000568472 ASIPP42127 132 aa15.52■□□□□ 0.08
CLN3-234ENST00000568472 PTH2Q96A98 100 aa15.52■□□□□ 0.08
CLN3-234ENST00000568472 SMDT1Q9H4I9 107 aa15.52■□□□□ 0.08
CLN3-234ENST00000568472 STARD9Q9P2P6 4700 aa15.52■□□□□ 0.07
CLN3-234ENST00000568472 IGHV4-4A0A075B6R2 117 aa15.51■□□□□ 0.07
CLN3-234ENST00000568472 C9JCJ5 164 aa15.51■□□□□ 0.07
CLN3-234ENST00000568472 F5H768 121 aa15.51■□□□□ 0.07
CLN3-234ENST00000568472 MRPL16Q9NX20 251 aaKnown RBP15.51■□□□□ 0.07
CLN3-234ENST00000568472 DAZAP1Q96EP5 407 aaKnown RBP15.5■□□□□ 0.07
CLN3-234ENST00000568472 C9orf85Q96MD7 179 aa15.5■□□□□ 0.07
CLN3-234ENST00000568472 PARLQ9H300 379 aa15.5■□□□□ 0.07
CLN3-234ENST00000568472 IL36BQ9NZH7 164 aa15.5■□□□□ 0.07
CLN3-234ENST00000568472 TRBV20OR9-2A0A075B6H5 130 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 M0R036 132 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 IGLV2-8P01709 118 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 CXCL1P09341 107 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 MGST1P10620 155 aaKnown RBP15.49■□□□□ 0.07
CLN3-234ENST00000568472 OR5I1Q13606 314 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 PEA15Q15121 130 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 PIK3CD-AS1Q5SR53 167 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 PRR27Q6MZM9 219 aa15.49■□□□□ 0.07
CLN3-234ENST00000568472 PCNPQ8WW12 178 aaKnown RBP15.49■□□□□ 0.07
CLN3-234ENST00000568472 RNASE3P12724 160 aaKnown RBP15.48■□□□□ 0.07
CLN3-234ENST00000568472 SLAQ13239 276 aa15.48■□□□□ 0.07
CLN3-234ENST00000568472 APLNQ9ULZ1 77 aa15.48■□□□□ 0.07
CLN3-234ENST00000568472 ZNF876PQ49A33 203 aa15.47■□□□□ 0.07
CLN3-234ENST00000568472 C15orf53Q8NAA6 179 aa15.47■□□□□ 0.07
CLN3-234ENST00000568472 DYNC2H1Q8NCM8 4307 aaKnown RBP15.47■□□□□ 0.07
CLN3-234ENST00000568472 CIDEAO60543 219 aa15.46■□□□□ 0.07
CLN3-234ENST00000568472 SRP19P09132 144 aaKnown RBP15.46■□□□□ 0.07
CLN3-234ENST00000568472 TMEM88Q6PEY1 159 aa15.46■□□□□ 0.07
CLN3-234ENST00000568472 LY96Q9Y6Y9 160 aa15.46■□□□□ 0.07
CLN3-234ENST00000568472 H3BNG1 76 aa15.45■□□□□ 0.06
CLN3-234ENST00000568472 MED14OSP0DP75 135 aa15.45■□□□□ 0.06
CLN3-234ENST00000568472 CEBPGP53567 150 aa15.45■□□□□ 0.06
CLN3-234ENST00000568472 RPS20P60866 119 aaKnown RBP15.45■□□□□ 0.06
CLN3-234ENST00000568472 TENM2Q9NT68 2774 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 TMSB15BA0A087X1C1 80 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 TRAV4A0A0B4J268 109 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 LCE6AA0A183 80 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 GRIFINA4D1Z8 144 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 C19orf71A6NCJ1 209 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 ARMS2P0C7Q2 107 aa15.44■□□□□ 0.06
CLN3-234ENST00000568472 FAM74A3Q4VXF1 159 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms