RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ERVFC1-1P60608 527 aa10.92□□□□□ -0.66
CLN3-229ENST00000567963 GOLT1AQ6ZVE7 132 aa10.92□□□□□ -0.66
CLN3-229ENST00000567963 PCNPQ8WW12 178 aaKnown RBP10.92□□□□□ -0.66
CLN3-229ENST00000567963 TVP23CQ96ET8 276 aa10.92□□□□□ -0.66
CLN3-229ENST00000567963 TRAV21A0A0B4J279 112 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 IGHV3-16A0A0C4DH30 117 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 G3V3Q6 166 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 M0R2P5 195 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 FUSP35637 526 aaKnown RBP eCLIP10.91□□□□□ -0.66
CLN3-229ENST00000567963 WFDC10BQ8IUB3 73 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 OR4C5Q8NGB2 326 aa10.91□□□□□ -0.66
CLN3-229ENST00000567963 TRAV8-1A0A0A6YYK1 113 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 C9JCJ5 164 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 RAB2AP61019 212 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 TCTE3Q8IZS6 198 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 OR10G9Q8NGN4 311 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 OR10G7Q8NGN6 311 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 TXNDC17Q9BRA2 123 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 TREM1Q9NP99 234 aa10.9□□□□□ -0.66
CLN3-229ENST00000567963 F6UZH7 168 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 HMGB3O15347 200 aaKnown RBP10.89□□□□□ -0.67
CLN3-229ENST00000567963 TYMSP04818 313 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 DNAH10OSP0CZ25 163 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 EVI2AP22794 236 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 CDPF1Q6NVV7 123 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 AKAP14Q86UN6 197 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 MSRB1Q9NZV6 116 aa10.89□□□□□ -0.67
CLN3-229ENST00000567963 A0A087WTM6 91 aa10.88□□□□□ -0.67
CLN3-229ENST00000567963 GNG5P63218 68 aa10.88□□□□□ -0.67
CLN3-229ENST00000567963 KCNS1Q96KK3 526 aa10.88□□□□□ -0.67
CLN3-229ENST00000567963 SDF2L1Q9HCN8 221 aa10.88□□□□□ -0.67
CLN3-229ENST00000567963 LOC100131303A0A0U1RQF7 123 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 OR2T35Q8NGX2 323 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 SGK494Q96LW2 274 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 STAG3L2P0CL84 134 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 STAG3L3P0CL85 134 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 ARL14EPLP0DKL9 152 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 CDC34P49427 236 aaPredicted RBP10.87□□□□□ -0.67
CLN3-229ENST00000567963 SH2D6Q7Z4S9 175 aa10.87□□□□□ -0.67
CLN3-229ENST00000567963 SERTM2A0A1B0GWG4 89 aa10.86□□□□□ -0.67
CLN3-229ENST00000567963 CRYGDP07320 174 aa10.86□□□□□ -0.67
CLN3-229ENST00000567963 GATA1P15976 413 aaPredicted RBP10.86□□□□□ -0.67
CLN3-229ENST00000567963 Q5BKY6 102 aa10.86□□□□□ -0.67
CLN3-229ENST00000567963 OR2G3Q8NGZ4 309 aa10.86□□□□□ -0.67
CLN3-229ENST00000567963 TCRAP04437 139 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 ZNF80P51504 273 aaPredicted RBP10.85□□□□□ -0.67
CLN3-229ENST00000567963 XGP55808 180 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 C10orf126Q8N4M7 172 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 NHLRC2Q8NBF2 726 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 SUN5Q8TC36 379 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 RAB24Q969Q5 203 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 NDFIP1Q9BT67 221 aa10.85□□□□□ -0.67
CLN3-229ENST00000567963 FBLL1A6NHQ2 334 aaKnown RBP10.84□□□□□ -0.67
CLN3-229ENST00000567963 EPM2AB3EWF7 344 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 TIRAPP58753 221 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 ZNF876PQ49A33 203 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 C5orf17Q8NAS9 161 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 HSD17B11Q8NBQ5 300 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 PSMG3Q9BT73 122 aaPredicted RBP10.84□□□□□ -0.67
CLN3-229ENST00000567963 C11orf21Q9P2W6 132 aa10.84□□□□□ -0.67
CLN3-229ENST00000567963 IGHV3-38A0A0C4DH36 116 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 K7EQM0 130 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 TAAR5O14804 337 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 C1QBP02746 253 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 GCHFRP30047 84 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 SLC25A29Q8N8R3 303 aa10.83□□□□□ -0.68
CLN3-229ENST00000567963 SMLR1H3BR10 107 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 CIDEAO60543 219 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 GCGP01275 180 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 IGLV2-11P01706 119 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 PFN1P07737 140 aaKnown RBP10.82□□□□□ -0.68
CLN3-229ENST00000567963 ATP6V0CP27449 155 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 PPT1P50897 306 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 KRTAP10-1P60331 282 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 SUMO1P63165 101 aaKnown RBP10.82□□□□□ -0.68
CLN3-229ENST00000567963 SERF2P84101 59 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 CFAP126Q5VTH2 177 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 DPPA3Q6W0C5 159 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 AQP10Q96PS8 301 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 PSG8Q9UQ74 426 aa10.82□□□□□ -0.68
CLN3-229ENST00000567963 TRBV6-4A0A1B0GX49 114 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 RS1O15537 224 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 MBP02144 154 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 OR11H4Q8NGC9 324 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 C9orf85Q96MD7 179 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 PRADC1Q9BSG0 188 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 EPDR1Q9UM22 224 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 TNFSF18Q9UNG2 199 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 HMSDA8MTL9 139 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 PFDN1O60925 122 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 CXorf1O96002 111 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 FLI1Q01543 452 aaPredicted RBP10.81□□□□□ -0.68
CLN3-229ENST00000567963 LINC01556Q5JQF7 62 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 TMEM75Q8N9X5 138 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 TMEM167BQ9NRX6 74 aa10.81□□□□□ -0.68
CLN3-229ENST00000567963 FAT1Q14517 4588 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 FXYD6-FXYD2A0A087WZ82 144 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 IGHV3-73A0A0B4J1V6 119 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 TRAV8-6A0A0B4J262 113 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 RNF222A6NCQ9 220 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms