RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SRD5A3Q9H8P0 318 aa22.43■■□□□ 1.18
CTCF-203ENST00000566078 GRIFINA4D1Z8 144 aa22.42■■□□□ 1.18
CTCF-203ENST00000566078 AMBPP02760 352 aa22.42■■□□□ 1.18
CTCF-203ENST00000566078 KRTAP10-11P60412 298 aa22.42■■□□□ 1.18
CTCF-203ENST00000566078 EGFEM1PQ0D2K5 195 aa22.42■■□□□ 1.18
CTCF-203ENST00000566078 ANXA2RQ3ZCQ2 193 aa22.42■■□□□ 1.18
CTCF-203ENST00000566078 FAM231BA6NCW3 169 aa22.41■■□□□ 1.18
CTCF-203ENST00000566078 INSP01308 110 aa22.41■■□□□ 1.18
CTCF-203ENST00000566078 RBMY1A1P0DJD3 496 aaKnown RBP22.41■■□□□ 1.18
CTCF-203ENST00000566078 RBMY1CP0DJD4 496 aa22.41■■□□□ 1.18
CTCF-203ENST00000566078 RBMY1FQ15415 496 aaKnown RBP22.41■■□□□ 1.18
CTCF-203ENST00000566078 ZNF575Q86XF7 245 aa22.41■■□□□ 1.18
CTCF-203ENST00000566078 NUP35Q8NFH5 326 aa22.41■■□□□ 1.18
CTCF-203ENST00000566078 G3V4G9 280 aa22.4■■□□□ 1.18
CTCF-203ENST00000566078 XCL2Q9UBD3 114 aa22.4■■□□□ 1.18
CTCF-203ENST00000566078 TRBV24-1A0A075B6N3 115 aa22.39■■□□□ 1.18
CTCF-203ENST00000566078 TRAV9-1A0A075B6T8 112 aa22.39■■□□□ 1.18
CTCF-203ENST00000566078 FAM159AQ6UWV7 190 aa22.39■■□□□ 1.18
CTCF-203ENST00000566078 PGLYRP4Q96LB8 373 aa22.39■■□□□ 1.18
CTCF-203ENST00000566078 PYGO2Q9BRQ0 406 aa22.39■■□□□ 1.18
CTCF-203ENST00000566078 SPINK4O60575 86 aa22.39■■□□□ 1.17
CTCF-203ENST00000566078 BTF3L4Q96K17 158 aa22.39■■□□□ 1.17
CTCF-203ENST00000566078 TPPP3Q9BW30 176 aa22.39■■□□□ 1.17
CTCF-203ENST00000566078 MORN3Q6PF18 240 aaPredicted RBP22.38■■□□□ 1.17
CTCF-203ENST00000566078 FAM210BQ96KR6 192 aa22.38■■□□□ 1.17
CTCF-203ENST00000566078 ZMAT5Q9UDW3 170 aaKnown RBP22.38■■□□□ 1.17
CTCF-203ENST00000566078 DNAH3Q8TD57 4116 aa22.38■■□□□ 1.17
CTCF-203ENST00000566078 SAMD5Q5TGI4 173 aa22.36■■□□□ 1.17
CTCF-203ENST00000566078 KCNS1Q96KK3 526 aa22.36■■□□□ 1.17
CTCF-203ENST00000566078 FOXA3P55318 350 aaPredicted RBP22.35■■□□□ 1.17
CTCF-203ENST00000566078 FER1L6-AS1Q8NA97 138 aa22.35■■□□□ 1.17
CTCF-203ENST00000566078 IGHV1OR15-1A0A075B7D0 117 aa22.35■■□□□ 1.17
CTCF-203ENST00000566078 TYMSP04818 313 aa22.35■■□□□ 1.17
CTCF-203ENST00000566078 IGLC6P0CF74 106 aa22.35■■□□□ 1.17
CTCF-203ENST00000566078 C20orf144Q9BQM9 153 aa22.35■■□□□ 1.17
CTCF-203ENST00000566078 GIG44P09565 113 aaPredicted RBP22.34■■□□□ 1.17
CTCF-203ENST00000566078 MRPL54Q6P161 138 aaKnown RBP22.34■■□□□ 1.17
CTCF-203ENST00000566078 GNRH2O43555 120 aa22.33■■□□□ 1.17
CTCF-203ENST00000566078 RAB5AP20339 215 aa22.33■■□□□ 1.17
CTCF-203ENST00000566078 TDRG1Q3Y452 100 aa22.33■■□□□ 1.17
CTCF-203ENST00000566078 LYZL1Q6UWQ5 148 aa22.33■■□□□ 1.17
CTCF-203ENST00000566078 ASIPP42127 132 aa22.32■■□□□ 1.16
CTCF-203ENST00000566078 C1QTNF4Q9BXJ3 329 aa22.32■■□□□ 1.16
CTCF-203ENST00000566078 TP53TG3Q9ULZ0 132 aa22.31■■□□□ 1.16
CTCF-203ENST00000566078 H3BVH4 76 aa22.31■■□□□ 1.16
CTCF-203ENST00000566078 CTRLP40313 264 aa22.31■■□□□ 1.16
CTCF-203ENST00000566078 LOC102724200A0A096LPH7 203 aaPredicted RBP22.3■■□□□ 1.16
CTCF-203ENST00000566078 ARMS2P0C7Q2 107 aa22.3■■□□□ 1.16
CTCF-203ENST00000566078 S100A4P26447 101 aaKnown RBP22.3■■□□□ 1.16
CTCF-203ENST00000566078 LINC01587Q99440 93 aa22.3■■□□□ 1.16
CTCF-203ENST00000566078 TMEM208Q9BTX3 173 aa22.3■■□□□ 1.16
CTCF-203ENST00000566078 BORCS7Q96B45 105 aa22.29■■□□□ 1.16
CTCF-203ENST00000566078 CSTL1Q9H114 145 aa22.29■■□□□ 1.16
CTCF-203ENST00000566078 MUC21A0A0G2JKD1 596 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 MUC21A0A140T8X8 626 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 CBY3A6NI87 242 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 FRMD6-AS1P0C7T7 363 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 C1orf158Q8N1D5 194 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 TIMM8BQ9Y5J9 83 aaPredicted RBP22.28■■□□□ 1.16
CTCF-203ENST00000566078 A0A1B0GUT8 65 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 IGHV4-30-4P0DP06 118 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 HTN1P15515 57 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 RPS10P46783 165 aaKnown RBP22.28■■□□□ 1.16
CTCF-203ENST00000566078 DNLZQ5SXM8 178 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 ATP5L2Q7Z4Y8 100 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 TMEM256Q8N2U0 113 aa22.28■■□□□ 1.16
CTCF-203ENST00000566078 TRGV11A0A075B6L2 103 aa22.26■■□□□ 1.15
CTCF-203ENST00000566078 IGHV3OR16-12A0A075B7B8 117 aa22.26■■□□□ 1.15
CTCF-203ENST00000566078 GOLT1BQ9Y3E0 138 aa22.26■■□□□ 1.15
CTCF-203ENST00000566078 A0A1B0GXF2 115 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 F2Z2F3 143 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 SNAI2O43623 268 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 OR5AL1P0C617 328 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 RNASE3P12724 160 aaKnown RBP22.25■■□□□ 1.15
CTCF-203ENST00000566078 SSTP61278 116 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 SSBP4Q9BWG4 385 aaPredicted RBP22.25■■□□□ 1.15
CTCF-203ENST00000566078 MUC4Q99102 2169 aa22.25■■□□□ 1.15
CTCF-203ENST00000566078 IGHV3-16A0A0C4DH30 117 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 MED14OSP0DP75 135 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 HBBP68871 147 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 RIGQ13278 110 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 CSNK1G2-AS1Q8NCQ2 148 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 LINC00467Q9BRT7 94 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 CAMPP49913 170 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 OR10AG1Q8NH19 301 aa22.24■■□□□ 1.15
CTCF-203ENST00000566078 PRM2P04554 102 aa22.23■■□□□ 1.15
CTCF-203ENST00000566078 APOC4P55056 127 aa22.23■■□□□ 1.15
CTCF-203ENST00000566078 MDFICQ9P1T7 246 aa22.23■■□□□ 1.15
CTCF-203ENST00000566078 KRTAP21-3Q3LHN1 58 aa22.22■■□□□ 1.15
CTCF-203ENST00000566078 RASL11AQ6T310 242 aa22.22■■□□□ 1.15
CTCF-203ENST00000566078 CNFNQ9BYD5 112 aa22.22■■□□□ 1.15
CTCF-203ENST00000566078 KIR2DL5BA0A0G2JN68 375 aa22.21■■□□□ 1.15
CTCF-203ENST00000566078 KIR2DL5BA0A0G2JPC4 375 aa22.21■■□□□ 1.15
CTCF-203ENST00000566078 RAB4BP61018 213 aa22.21■■□□□ 1.15
CTCF-203ENST00000566078 KIR2DL5AQ8N109 375 aa22.21■■□□□ 1.15
CTCF-203ENST00000566078 KIR2DL5BQ8NHK3 375 aa22.21■■□□□ 1.15
CTCF-203ENST00000566078 SPRY2O43597 315 aa22.2■■□□□ 1.15
CTCF-203ENST00000566078 WDR73Q6P4I2 378 aa22.2■■□□□ 1.15
CTCF-203ENST00000566078 SCRT2Q9NQ03 307 aa22.2■■□□□ 1.15
CTCF-203ENST00000566078 PHLDA3Q9Y5J5 127 aa22.2■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms