RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 TRIM16LQ309B1 348 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 KRTAP20-1Q3LI63 56 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 Q6ZVQ6 151 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 RNASE11Q8TAA1 199 aaKnown RBP2.95□□□□□ -1.94
VPS35-204ENST00000563884 MARCH1Q8TCQ1 289 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 ZNF431Q8TF32 576 aaPredicted RBP2.95□□□□□ -1.94
VPS35-204ENST00000563884 MRGPRFQ96AM1 343 aa2.95□□□□□ -1.94
VPS35-204ENST00000563884 IGKV2-24A0A0C4DH68 120 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 TRBV6-4A0A1B0GX49 114 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 EFCAB10A6NFE3 127 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 PRSS46E5RG02 174 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 M0R2T5 61 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 NDUFS6O75380 124 aaKnown RBP2.94□□□□□ -1.94
VPS35-204ENST00000563884 WBP4O75554 376 aaKnown RBP2.94□□□□□ -1.94
VPS35-204ENST00000563884 TNFAIP8O95379 198 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 TSPAN13O95857 204 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 MT-ND6P03923 174 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 UCHL1P09936 223 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 PKIAP61925 76 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 MT1HP80294 61 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 MIAQ16674 131 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 ASB16-AS1Q495Z4 193 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 CDNFQ49AH0 187 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 LPCAT3Q6P1A2 487 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 Q6ZQT7 251 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 TMUB2Q71RG4 321 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 CYB561D1Q8N8Q1 229 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 TRGV9Q99603 122 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 ATP5SQ99766 215 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 PARD6GQ9BYG4 376 aaPredicted RBP2.94□□□□□ -1.94
VPS35-204ENST00000563884 ATG5Q9H1Y0 275 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 AUNIPQ9H7T9 357 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 SLC39A9Q9NUM3 307 aa2.94□□□□□ -1.94
VPS35-204ENST00000563884 IGLV10-54A0A075B6I4 117 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 TCRBV3S1A0A5B6 114 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 H0Y9J4 135 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 EI24O14681 340 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 GPX1P07203 203 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 HSMCR30P0CW71 290 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 GPX4P36969 197 aaPredicted RBP2.93□□□□□ -1.94
VPS35-204ENST00000563884 ATP5IP56385 69 aaPredicted RBP2.93□□□□□ -1.94
VPS35-204ENST00000563884 SLC25A29Q8N8R3 303 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 TMEM80Q96HE8 168 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 SRRQ9GZT4 340 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 MIXL1Q9H2W2 232 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 CARHSP1Q9Y2V2 147 aaKnown RBP2.93□□□□□ -1.94
VPS35-204ENST00000563884 AK6Q9Y3D8 172 aaKnown RBP2.93□□□□□ -1.94
VPS35-204ENST00000563884 PXMP4Q9Y6I8 212 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 V9GY05 133 aa2.93□□□□□ -1.94
VPS35-204ENST00000563884 CEBPZOSA8MTT3 80 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 ANKRD65E5RJM6 399 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 H3BRN7 92 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 NMBP08949 121 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 OR4E1P0C645 316 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 MGST1P10620 155 aaKnown RBP2.92□□□□□ -1.94
VPS35-204ENST00000563884 ORM2P19652 201 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 RNASE4P34096 147 aaKnown RBP2.92□□□□□ -1.94
VPS35-204ENST00000563884 TSPAN5P62079 268 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 COX6A2Q02221 97 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 BTN1A1Q13410 526 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 TRAM1Q15629 374 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 KRTAP6-3Q3LI67 103 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 NMSQ5H8A3 153 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 ARRDC1Q8N5I2 433 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 LINC00337Q8N6G1 96 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 OR1S1Q8NH92 325 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 RHOXF1Q8NHV9 184 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 LHFPL5Q8TAF8 219 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 DNAJC30Q96LL9 226 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 EHFQ9NZC4 300 aa2.92□□□□□ -1.94
VPS35-204ENST00000563884 TRAV6A0A075B6T7 132 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 LINC00854A0A1B0GVQ3 168 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 C5orf51A6NDU8 294 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 C5orf52A6NGY3 159 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 M0R2P5 195 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 PDCD5O14737 125 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 FGF8P55075 233 aaPredicted RBP2.91□□□□□ -1.94
VPS35-204ENST00000563884 Q1RN00 199 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 LRRC37A5PQ49AS3 106 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 LINC00242Q5T6M2 205 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 AHSA2Q719I0 299 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 KRTAP11-1Q8IUC1 163 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 YIPF6Q96EC8 236 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 LINC00477Q96M19 166 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 ZNF2Q9BSG1 426 aaPredicted RBP2.91□□□□□ -1.94
VPS35-204ENST00000563884 SHANK2-AS3Q9BTD1 123 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 SAMD10Q9BYL1 202 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 NAA50Q9GZZ1 169 aaKnown RBP2.91□□□□□ -1.94
VPS35-204ENST00000563884 ZNF331Q9NQX6 463 aaPredicted RBP2.91□□□□□ -1.94
VPS35-204ENST00000563884 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.91□□□□□ -1.94
VPS35-204ENST00000563884 HIGD1AQ9Y241 93 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 U3KQ87 197 aa2.91□□□□□ -1.94
VPS35-204ENST00000563884 IGKV1D-37A0A075B6S9 117 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 A0A1B0GVG6 124 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 IGKV1-39P01597 117 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 IGKV1-5P01602 117 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 ANGP03950 147 aaKnown RBP2.9□□□□□ -1.95
VPS35-204ENST00000563884 IGKV1D-39P04432 117 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 GZMBP10144 247 aa2.9□□□□□ -1.95
VPS35-204ENST00000563884 CRISP2P16562 243 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms