RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 MED14OSP0DP75 135 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 RASL11AQ6T310 242 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 ZNF575Q86XF7 245 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 Q8N1Y9 231 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 NUP35Q8NFH5 326 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 C1QTNF4Q9BXJ3 329 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 CNFNQ9BYD5 112 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 WFDC10AQ9H1F0 79 aa10.22□□□□□ -0.77
CLK3-209ENST00000562670 AGRNO00468 2067 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 NOTCH3Q9UM47 2321 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 J3KRW8 73 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 FAM3BP58499 235 aaPredicted RBP10.21□□□□□ -0.77
CLK3-209ENST00000562670 COX19Q49B96 90 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 SAMD5Q5TGI4 173 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 TMEM256Q8N2U0 113 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 FAM210BQ96KR6 192 aa10.21□□□□□ -0.77
CLK3-209ENST00000562670 DNAH3Q8TD57 4116 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 TRAV12-2A0A075B6T6 113 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 TGIF2-C20orf24A0A0A6YYL0 155 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 TRAV12-3A0A0B4J271 114 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 A0A1B0GW15 77 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 F2Z2F3 143 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 SNAI2O43623 268 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 OR5AL1P0C617 328 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 TCL1AP56279 114 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 ANXA2RQ3ZCQ2 193 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 OXLD1Q5BKU9 147 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 FAM159AQ6UWV7 190 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 DEFB125Q8N687 156 aa10.2□□□□□ -0.78
CLK3-209ENST00000562670 SSBP4Q9BWG4 385 aaPredicted RBP10.2□□□□□ -0.78
CLK3-209ENST00000562670 IGHV1OR15-1A0A075B7D0 117 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 KIR2DL5BA0A0G2JN68 375 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 KIR2DL5BA0A0G2JPC4 375 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 A0A1B0GXF2 115 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 GZMBP10144 247 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 RAB5AP20339 215 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 WDR73Q6P4I2 378 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 Q6ZQT7 251 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 KIR2DL5AQ8N109 375 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 FER1L6-AS1Q8NA97 138 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 KIR2DL5BQ8NHK3 375 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 SRD5A3Q9H8P0 318 aa10.19□□□□□ -0.78
CLK3-209ENST00000562670 TMSB15BA0A087X1C1 80 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 A0A1B0GUT8 65 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 A8MZ25 164 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 GIG44P09565 113 aaPredicted RBP10.18□□□□□ -0.78
CLK3-209ENST00000562670 RBMY1A1P0DJD3 496 aaKnown RBP10.18□□□□□ -0.78
CLK3-209ENST00000562670 RBMY1CP0DJD4 496 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 ASIPP42127 132 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 RBMY1FQ15415 496 aaKnown RBP10.18□□□□□ -0.78
CLK3-209ENST00000562670 SCRT2Q9NQ03 307 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 NAGKQ9UJ70 344 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 TP53TG3Q9ULZ0 132 aa10.18□□□□□ -0.78
CLK3-209ENST00000562670 TRGV11A0A075B6L2 103 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 MT-ND6P03923 174 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 S100A8P05109 93 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 FXYD7P58549 80 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 GATD1Q8NB37 220 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 BORCS7Q96B45 105 aa10.17□□□□□ -0.78
CLK3-209ENST00000562670 IGHV4-4A0A075B6R2 117 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 LOC102724200A0A096LPH7 203 aaPredicted RBP10.16□□□□□ -0.78
CLK3-209ENST00000562670 NXPH4O95158 308 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 KRTAP10-11P60412 298 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 HBBP68871 147 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 RIGQ13278 110 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 MUC21Q5SSG8 566 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 KPRPQ5T749 579 aaPredicted RBP10.16□□□□□ -0.78
CLK3-209ENST00000562670 LYZL1Q6UWQ5 148 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.16□□□□□ -0.78
CLK3-209ENST00000562670 CSNK1G2-AS1Q8NCQ2 148 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 PGLYRP4Q96LB8 373 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 GNB1LQ9BYB4 327 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 CSTL1Q9H114 145 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 XCL2Q9UBD3 114 aa10.16□□□□□ -0.78
CLK3-209ENST00000562670 PKD1L1Q8TDX9 2849 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 IGHV3-16A0A0C4DH30 117 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 GRIFINA4D1Z8 144 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 ARMS2P0C7Q2 107 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 RNASE3P12724 160 aaKnown RBP10.15□□□□□ -0.78
CLK3-209ENST00000562670 RPL35AP18077 110 aaKnown RBP10.15□□□□□ -0.78
CLK3-209ENST00000562670 APOC4P55056 127 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 CACNG7P62955 275 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 C1orf158Q8N1D5 194 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 C9orf85Q96MD7 179 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 GOLT1BQ9Y3E0 138 aa10.15□□□□□ -0.78
CLK3-209ENST00000562670 G3V4G9 280 aa10.14□□□□□ -0.79
CLK3-209ENST00000562670 H3BVH4 76 aa10.14□□□□□ -0.79
CLK3-209ENST00000562670 HLA-DQA1P01909 254 aa10.14□□□□□ -0.79
CLK3-209ENST00000562670 S100A4P26447 101 aaKnown RBP10.14□□□□□ -0.79
CLK3-209ENST00000562670 MRPL54Q6P161 138 aaKnown RBP10.14□□□□□ -0.79
CLK3-209ENST00000562670 ZNF705AQ6ZN79 300 aaPredicted RBP10.14□□□□□ -0.79
CLK3-209ENST00000562670 UBE2CO00762 179 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 IGHV4-30-4P0DP06 118 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 RPS10P46783 165 aaKnown RBP10.13□□□□□ -0.79
CLK3-209ENST00000562670 PIK3CD-AS1Q5SR53 167 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 ZNF493Q6ZR52 646 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 TMEM136Q6ZRR5 245 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 TPPP3Q9BW30 176 aa10.13□□□□□ -0.79
CLK3-209ENST00000562670 CBY3A6NI87 242 aa10.12□□□□□ -0.79
CLK3-209ENST00000562670 GNRH2O43555 120 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms