RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PYY3Q5JQD4 70 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 RNASEKQ6P5S7 137 aaKnown RBP5.66□□□□□ -1.5
VPS39-204ENST00000561818 MRPL52Q86TS9 123 aaKnown RBP5.66□□□□□ -1.5
VPS39-204ENST00000561818 RAX2Q96IS3 184 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 PRELID3AQ96N28 172 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 LINC00467Q9BRT7 94 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 DPH3P1Q9H4G8 78 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 GSN-AS1Q9NRJ2 163 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 TP53TG3Q9ULZ0 132 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 HLA-DRB4X5D2U9 266 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 MYO9AB2RTY4 2548 aa5.66□□□□□ -1.5
VPS39-204ENST00000561818 HIVEP2P31629 2446 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 IFITM10A6NMD0 228 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 PRSS47A8MTI9 375 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 NXPH4O95158 308 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 LEPROTL1O95214 131 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 SCGB1D1O95968 90 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 ZNF688P0C7X2 276 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 GZMBP10144 247 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 BTF3P20290 206 aaKnown RBP5.65□□□□□ -1.5
VPS39-204ENST00000561818 HLA-DMBP28068 263 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 CTAG1AP78358 180 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 C4orf48Q5BLP8 95 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 GFI1BQ5VTD9 330 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 LINC01006Q8NI28 216 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 PTH2Q96A98 100 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 C20orf173Q96LM9 149 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 C20orf78Q9BR46 151 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 MAP1LC3CQ9BXW4 147 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 SCRT2Q9NQ03 307 aa5.65□□□□□ -1.5
VPS39-204ENST00000561818 IGKV3D-20A0A0C4DH25 116 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 HSBP1L1C9JCN9 74 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 H7C1H1 209 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 CRXO43186 299 aaPredicted RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 CIDEAO60543 219 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 ZNF80P51504 273 aaPredicted RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 RPL32P62910 135 aaKnown RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 KIAA1644Q3SXP7 199 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 LBHQ53QV2 105 aaPredicted RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 NIT1Q86X76 327 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 TMEM70Q9BUB7 260 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 MCRIP2Q9BUT9 160 aaKnown RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 C1QTNF4Q9BXJ3 329 aa5.64□□□□□ -1.51
VPS39-204ENST00000561818 FLNAP21333 2647 aaKnown RBP5.64□□□□□ -1.51
VPS39-204ENST00000561818 TMSB15BA0A087X1C1 80 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 LINC01546A6NGU7 62 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 D6R8Y8 96 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 RHODO00212 210 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 INSP01308 110 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 HBDP02042 147 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 CSN3P07498 182 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 RNASE4P34096 147 aaKnown RBP5.63□□□□□ -1.51
VPS39-204ENST00000561818 SLURP1P55000 103 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 PROK1P58294 105 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 DEFB114Q30KQ6 69 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 ORMDL2Q53FV1 153 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 GDF5OSQ5U4N7 250 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 IGFL4Q6B9Z1 124 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 PET117Q6UWS5 81 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 SPATA12Q7Z6I5 190 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 VAMP8Q9BV40 100 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 ESM1Q9NQ30 184 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 ZMAT5Q9UDW3 170 aaKnown RBP5.63□□□□□ -1.51
VPS39-204ENST00000561818 TENM4Q6N022 2769 aa5.63□□□□□ -1.51
VPS39-204ENST00000561818 IGKV3-7A0A075B6H7 116 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 IGHV1OR15-1A0A075B7D0 117 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 OR11H12B2RN74 326 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 H3BVH4 76 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 ATP5LO75964 103 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 ZNF705DP0CH99 300 aaPredicted RBP5.62□□□□□ -1.51
VPS39-204ENST00000561818 ZNF415Q09FC8 603 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 ANXA2RQ3ZCQ2 193 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 MRPL51Q4U2R6 128 aaKnown RBP5.62□□□□□ -1.51
VPS39-204ENST00000561818 MORN3Q6PF18 240 aaPredicted RBP5.62□□□□□ -1.51
VPS39-204ENST00000561818 TEX43Q6ZNM6 134 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 WFDC3Q8IUB2 231 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 STHQ8IWL8 128 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 AMN1Q8IY45 258 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 TMEM61Q8N0U2 210 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 DLX4Q92988 240 aaPredicted RBP5.62□□□□□ -1.51
VPS39-204ENST00000561818 SPXQ9BT56 116 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 EDA2RQ9HAV5 297 aa5.62□□□□□ -1.51
VPS39-204ENST00000561818 IGHV1-24A0A0C4DH33 117 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 A8MWV9 139 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 H3BMM0 161 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 LY6G6DO95868 133 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 PF4P02776 101 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 CD7P09564 240 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 ZNF705BP0CI00 300 aaPredicted RBP5.61□□□□□ -1.51
VPS39-204ENST00000561818 TFPI2P48307 235 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 DEFB131AP59861 70 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 KRTDAPP60985 99 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 C10orf99Q6UWK7 81 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 POM121L12Q8N7R1 296 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 Q8N8P6 123 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 RCHY1Q96PM5 261 aa5.61□□□□□ -1.51
VPS39-204ENST00000561818 TEX15Q9BXT5 2789 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 KIR2DL5BA0A0G2JN68 375 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 KIR2DL5BA0A0G2JPC4 375 aa5.6□□□□□ -1.51
VPS39-204ENST00000561818 WIPF1O43516 503 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms