RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF674Q2M3X9 581 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 C12orf74Q32Q52 190 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 FAM159AQ6UWV7 190 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 PARLQ9H300 379 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 GNRH2O43555 120 aa15.51■□□□□ 0.07
SNX1-210ENST00000560260 CLLU1Q5K131 121 aa15.51■□□□□ 0.07
SNX1-210ENST00000560260 NOP10Q9NPE3 64 aaKnown RBP15.51■□□□□ 0.07
SNX1-210ENST00000560260 MDFICQ9P1T7 246 aa15.51■□□□□ 0.07
SNX1-210ENST00000560260 IGKV3D-20A0A0C4DH25 116 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 FABP5P3A8MUU1 101 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 NDUFS6O75380 124 aaKnown RBP15.5■□□□□ 0.07
SNX1-210ENST00000560260 SPART-AS1P0CW21 52 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 TCL1AP56279 114 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 IBA57Q5T440 356 aaKnown RBP15.5■□□□□ 0.07
SNX1-210ENST00000560260 ZFAND6Q6FIF0 208 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 Q6ZTC4 211 aa15.5■□□□□ 0.07
SNX1-210ENST00000560260 TIMM8BQ9Y5J9 83 aaPredicted RBP15.5■□□□□ 0.07
SNX1-210ENST00000560260 IGHV3-16A0A0C4DH30 117 aa15.49■□□□□ 0.07
SNX1-210ENST00000560260 GNG4P50150 75 aa15.49■□□□□ 0.07
SNX1-210ENST00000560260 RAB14P61106 215 aa15.49■□□□□ 0.07
SNX1-210ENST00000560260 FAM162BQ5T6X4 162 aa15.49■□□□□ 0.07
SNX1-210ENST00000560260 TRGV11A0A075B6L2 103 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 LYRM9A8MSI8 78 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 SNURFLB1AK76 121 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 CEBPGP53567 150 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 ZNF415Q09FC8 603 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 SDF2L1Q9HCN8 221 aa15.48■□□□□ 0.07
SNX1-210ENST00000560260 C9JCJ5 164 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 M0R036 132 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 DAZ2Q13117 558 aaKnown RBP15.47■□□□□ 0.07
SNX1-210ENST00000560260 PRR27Q6MZM9 219 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 ZNF575Q86XF7 245 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 LINC00612Q8N6U2 182 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 KCNS1Q96KK3 526 aa15.47■□□□□ 0.07
SNX1-210ENST00000560260 TEX48A0A1B0GUV7 120 aa15.46■□□□□ 0.07
SNX1-210ENST00000560260 KRBOX1C9JBD0 128 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 DEFB130BP0DP73 79 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 DEFB130AP0DP74 79 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 MGST1P10620 155 aaKnown RBP15.45■□□□□ 0.06
SNX1-210ENST00000560260 LINC01559Q495D7 138 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 Q6ZTI0 123 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 SMIM12Q96EX1 92 aa15.45■□□□□ 0.06
SNX1-210ENST00000560260 K7EN84 100 aa15.44■□□□□ 0.06
SNX1-210ENST00000560260 SPINK4O60575 86 aa15.44■□□□□ 0.06
SNX1-210ENST00000560260 ORM1P02763 201 aa15.44■□□□□ 0.06
SNX1-210ENST00000560260 DAD1P61803 113 aa15.44■□□□□ 0.06
SNX1-210ENST00000560260 RPL19P84098 196 aaKnown RBP15.44■□□□□ 0.06
SNX1-210ENST00000560260 PHLDA1Q8WV24 401 aaPredicted RBP15.44■□□□□ 0.06
SNX1-210ENST00000560260 MRPL16Q9NX20 251 aaKnown RBP15.44■□□□□ 0.06
SNX1-210ENST00000560260 TMSB15BA0A087X1C1 80 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GAGE12BA1L429 117 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 B4DEV8 164 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GAGE7O76087 117 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GAGE12FP0CL80 117 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GAGE12GP0CL81 117 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GAGE12IP0CL82 117 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 OR5I1Q13606 314 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 PEA15Q15121 130 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 OCC1Q8TAD7 63 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 GRIFINA4D1Z8 144 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 C19orf71A6NCJ1 209 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 C3orf84H3BNL1 204 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 RNASE3P12724 160 aaKnown RBP15.43■□□□□ 0.06
SNX1-210ENST00000560260 C9orf85Q96MD7 179 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 SMIM7Q9BQ49 75 aa15.43■□□□□ 0.06
SNX1-210ENST00000560260 TRGV1A0A0A0MS02 117 aa15.42■□□□□ 0.06
SNX1-210ENST00000560260 CASC10Q5T4H9 136 aa15.42■□□□□ 0.06
SNX1-210ENST00000560260 SMDT1Q9H4I9 107 aa15.41■□□□□ 0.06
SNX1-210ENST00000560260 TRAV10A0A0B4J240 114 aa15.4■□□□□ 0.06
SNX1-210ENST00000560260 ZNF727A8MUV8 499 aa15.4■□□□□ 0.06
SNX1-210ENST00000560260 ASIPP42127 132 aa15.4■□□□□ 0.06
SNX1-210ENST00000560260 CEMP1Q6PRD7 247 aaPredicted RBP15.4■□□□□ 0.06
SNX1-210ENST00000560260 SPXQ9BT56 116 aa15.4■□□□□ 0.06
SNX1-210ENST00000560260 MUC4Q99102 2169 aa15.39■□□□□ 0.05
SNX1-210ENST00000560260 H3BVH4 76 aa15.39■□□□□ 0.05
SNX1-210ENST00000560260 DNLZQ5SXM8 178 aa15.39■□□□□ 0.05
SNX1-210ENST00000560260 DEFB131BA0A096LNP1 70 aa15.38■□□□□ 0.05
SNX1-210ENST00000560260 HTN3P15516 51 aa15.38■□□□□ 0.05
SNX1-210ENST00000560260 LGALS9BQ3B8N2 356 aa15.38■□□□□ 0.05
SNX1-210ENST00000560260 LINC01551Q86U37 167 aa15.38■□□□□ 0.05
SNX1-210ENST00000560260 LY96Q9Y6Y9 160 aa15.38■□□□□ 0.05
SNX1-210ENST00000560260 NUPR2A6NF83 97 aa15.37■□□□□ 0.05
SNX1-210ENST00000560260 M0R2P5 195 aa15.37■□□□□ 0.05
SNX1-210ENST00000560260 RNASE7Q9H1E1 156 aaKnown RBP15.37■□□□□ 0.05
SNX1-210ENST00000560260 SACSQ9NZJ4 4579 aa15.37■□□□□ 0.05
SNX1-210ENST00000560260 CXCL1P09341 107 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 ARMS2P0C7Q2 107 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 S100A4P26447 101 aaKnown RBP15.36■□□□□ 0.05
SNX1-210ENST00000560260 NUDT10Q8NFP7 164 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 RASL10AQ92737 203 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 NUDT11Q96G61 164 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 C18orf15Q96N68 181 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 BIN3Q9NQY0 253 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 IL36BQ9NZH7 164 aa15.36■□□□□ 0.05
SNX1-210ENST00000560260 DNAH1Q9P2D7 4330 aa15.35■□□□□ 0.05
SNX1-210ENST00000560260 ATP5G1P05496 136 aa15.35■□□□□ 0.05
SNX1-210ENST00000560260 OR2D3Q8NGH3 330 aa15.35■□□□□ 0.05
SNX1-210ENST00000560260 SCRT2Q9NQ03 307 aa15.35■□□□□ 0.05
SNX1-210ENST00000560260 TRGV2A0A075B6R0 118 aa15.34■□□□□ 0.05
SNX1-210ENST00000560260 P01737 135 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms