RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 Q9H3A6 140 aa6.43□□□□□ -1.38
USP3-211ENST00000559257 ZNF71Q9NQZ8 489 aaPredicted RBP6.43□□□□□ -1.38
USP3-211ENST00000559257 TMEM14BQ9NUH8 114 aa6.43□□□□□ -1.38
USP3-211ENST00000559257 XCL2Q9UBD3 114 aa6.43□□□□□ -1.38
USP3-211ENST00000559257 TRBV19A0A075B6N1 114 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 TIMM17BO60830 172 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 CCKP06307 115 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 SAA4P35542 130 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 SNRPD3P62318 126 aaKnown RBP6.42□□□□□ -1.38
USP3-211ENST00000559257 PATE2Q6UY27 113 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 Q6ZS46 218 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 FSCN3Q9NQT6 498 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 TET2Q6N021 2002 aaPredicted RBP6.42□□□□□ -1.38
USP3-211ENST00000559257 WNT9BO14905 357 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 RSPO4Q2I0M5 234 aaPredicted RBP6.42□□□□□ -1.38
USP3-211ENST00000559257 LYPD5Q6UWN5 251 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 PRNTQ86SH4 94 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 MRPL53Q96EL3 112 aaKnown RBP6.42□□□□□ -1.38
USP3-211ENST00000559257 CNFNQ9BYD5 112 aa6.42□□□□□ -1.38
USP3-211ENST00000559257 H7C2G1 150 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 GATA1P15976 413 aaPredicted RBP6.41□□□□□ -1.38
USP3-211ENST00000559257 FANCD2OSQ96PS1 177 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 U3KQE9 123 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 SS18Q15532 418 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 FAM222AQ5U5X8 452 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 DYNAPQ8N1N2 210 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 KLHL30-AS1Q8NEE0 82 aa6.41□□□□□ -1.38
USP3-211ENST00000559257 FGF23Q9GZV9 251 aaPredicted RBP6.41□□□□□ -1.38
USP3-211ENST00000559257 UNC13CQ8NB66 2214 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 SPRY2O43597 315 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 MAGEA5P43359 124 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 KLKP1Q107X0 134 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 TOMM6Q96B49 74 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 AMELXQ99217 191 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 UBE2D4Q9Y2X8 147 aa6.4□□□□□ -1.38
USP3-211ENST00000559257 IGHV1-58A0A0C4DH39 117 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 A0A0J9YX75 114 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 NDUFC1O43677 76 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 IGKV3-11P04433 115 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 PRSS2P07478 247 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 GP9P14770 177 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 VKORC1L1Q8N0U8 176 aa6.4□□□□□ -1.39
USP3-211ENST00000559257 IGHV3OR16-10A0A075B7F0 116 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 TRAV3A0A0B4J244 114 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 CRIP1P50238 77 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 MRPS21P82921 87 aaKnown RBP6.39□□□□□ -1.39
USP3-211ENST00000559257 CFHR1Q03591 330 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 FOXF2Q12947 444 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 COX8CQ7Z4L0 72 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 ZNF491Q8N8L2 437 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 NRACQ8N912 160 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 THAP8Q8NA92 274 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 UBALD1Q8TB05 177 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 SCGB3A1Q96QR1 104 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 LINC00474Q9P2X8 69 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 MOB4Q9Y3A3 225 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 USF3Q68DE3 2245 aa6.39□□□□□ -1.39
USP3-211ENST00000559257 ABCA7Q8IZY2 2146 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 TMEM30CPA0ZSE6 113 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 M0R1B8 84 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 VEGFBP49765 207 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 PRCDQ00LT1 54 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 MUSTN1Q8IVN3 82 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 Q8IYB0 196 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 KLF14Q8TD94 323 aaPredicted RBP6.38□□□□□ -1.39
USP3-211ENST00000559257 C11orf86A6NJI1 115 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 IBA57-AS1B1ANH7 110 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 GHRHP01286 108 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 GRNP28799 593 aaKnown RBP6.38□□□□□ -1.39
USP3-211ENST00000559257 UBE2E1P51965 193 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 CD164L2Q6UWJ8 174 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 C20orf197Q8N268 126 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 CCDC140Q96MF4 163 aa6.38□□□□□ -1.39
USP3-211ENST00000559257 PRRC2BQ5JSZ5 2229 aaKnown RBP6.38□□□□□ -1.39
USP3-211ENST00000559257 SDHAF1A6NFY7 115 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 C12orf77C9JDV5 145 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 CD40P25942 277 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 SUB1P53999 127 aaKnown RBP eCLIP6.37□□□□□ -1.39
USP3-211ENST00000559257 UBE2E2Q96LR5 201 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 TM2D3Q9BRN9 247 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 TMEM14CQ9P0S9 112 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 PCNTO95613 3336 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 CACNA1DQ01668 2161 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 TRAV8-3A0A0A6YYJ7 113 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 IGHV1OR15-9A0A0B4J2B8 117 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 IGF1P05019 195 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 RBM3P98179 157 aaKnown RBP6.37□□□□□ -1.39
USP3-211ENST00000559257 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.37□□□□□ -1.39
USP3-211ENST00000559257 C14orf178Q8N769 122 aaPredicted RBP6.37□□□□□ -1.39
USP3-211ENST00000559257 CCL4L1Q8NHW4 92 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 CLEC2BQ92478 149 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 RBM12B-AS1Q9P1G2 102 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 CTSZQ9UBR2 303 aa6.37□□□□□ -1.39
USP3-211ENST00000559257 DIDO1Q9BTC0 2240 aaKnown RBP6.36□□□□□ -1.39
USP3-211ENST00000559257 H3BTX0 84 aa6.36□□□□□ -1.39
USP3-211ENST00000559257 EFNA2O43921 213 aa6.36□□□□□ -1.39
USP3-211ENST00000559257 LGALS3P17931 250 aaKnown RBP6.36□□□□□ -1.39
USP3-211ENST00000559257 HOXD3P31249 432 aaPredicted RBP6.36□□□□□ -1.39
USP3-211ENST00000559257 PLGLAQ15195 96 aa6.36□□□□□ -1.39
USP3-211ENST00000559257 ATP5EP2Q5VTU8 51 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 140.1 ms