RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SNCGO76070 127 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 LY6HO94772 140 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 ARL3P36405 182 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 LYZP61626 148 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 Q71RC1 249 aaPredicted RBP8.46□□□□□ -1.06
USP3-206ENST00000558157 GAFA1Q96PS6 74 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 SHANK2-AS3Q9BTD1 123 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 RAB1BQ9H0U4 201 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 LRRK2Q5S007 2527 aa8.46□□□□□ -1.06
USP3-206ENST00000558157 F8VRH5 84 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 H7C1H1 209 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 IGLV2-23P01705 113 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 TTC32Q5I0X7 151 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 C10orf55Q5SWW7 151 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 SMIM20Q8N5G0 67 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 CCL13Q99616 98 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 IGLV2-18A0A075B6J9 118 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 LINC01549A6NIU2 74 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 FAM216BQ8N7L0 139 aa8.45□□□□□ -1.06
USP3-206ENST00000558157 SPTAN1Q13813 2472 aaKnown RBP8.45□□□□□ -1.06
USP3-206ENST00000558157 LOC107984156A0A0G2JMH3 177 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 H3BRN7 92 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 J3QKU1 62 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 LAGE3Q14657 143 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 ARL17AQ8IVW1 177 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 C8orf31Q8N9H6 132 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 C8orf49Q96NF6 230 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 AAMDCQ9H7C9 122 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 CNIH1O95406 144 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 COX6B1P14854 86 aa8.44□□□□□ -1.06
USP3-206ENST00000558157 FCN3O75636 299 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 LGALS1P09382 135 aaKnown RBP8.43□□□□□ -1.06
USP3-206ENST00000558157 SCGB1C2P0DMR2 95 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 DIAPH2-AS1Q14236 149 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 RUSC1-AS1Q66K80 236 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 RASL11BQ9BPW5 248 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 TENM4Q6N022 2769 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 DSCAML1Q8TD84 2053 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 TMSB15BA0A087X1C1 80 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 TMEM78Q5T7P6 136 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 LYPD2Q6UXB3 125 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 PPP1R27Q86WC6 154 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 LINC00311Q8N616 119 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 ANKRD29Q8N6D5 301 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 PTH2Q96A98 100 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 TMEM126AQ9H061 195 aa8.43□□□□□ -1.06
USP3-206ENST00000558157 CD7P09564 240 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 RPL27AP46776 148 aaKnown RBP8.42□□□□□ -1.06
USP3-206ENST00000558157 HCP5Q6MZN7 132 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 AJUBAQ96IF1 538 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 LINC01600Q96MT4 127 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 MRPS12O15235 138 aaKnown RBP8.42□□□□□ -1.06
USP3-206ENST00000558157 EGR2P11161 476 aaPredicted RBP8.42□□□□□ -1.06
USP3-206ENST00000558157 ZFP2Q6ZN57 461 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 PRR25Q96S07 402 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 CTSZQ9UBR2 303 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 AGRNO00468 2067 aa8.42□□□□□ -1.06
USP3-206ENST00000558157 CCDC179H3BU77 68 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 NDUFA3O95167 84 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 TCL1BO95988 128 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 SLC25A16P16260 332 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 MRPL23Q16540 153 aaKnown RBP8.41□□□□□ -1.06
USP3-206ENST00000558157 OR10J6PQ8NGY7 276 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 MRGPRG-AS1Q2M3A8 158 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 NDUFA11Q86Y39 141 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 IGFBPL1Q8WX77 278 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 CCL19Q99731 98 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 HIF1ANQ9NWT6 349 aa8.41□□□□□ -1.06
USP3-206ENST00000558157 SRSF9Q13242 221 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP3-206ENST00000558157 C17orf77Q96MU5 243 aa8.4□□□□□ -1.06
USP3-206ENST00000558157 ZNRD1Q9P1U0 126 aa8.4□□□□□ -1.06
USP3-206ENST00000558157 BRI3O95415 125 aa8.4□□□□□ -1.07
USP3-206ENST00000558157 EFNA4P52798 201 aa8.4□□□□□ -1.07
USP3-206ENST00000558157 IL17RELQ6ZVW7 336 aa8.4□□□□□ -1.07
USP3-206ENST00000558157 SRSF8Q9BRL6 282 aaKnown RBP8.4□□□□□ -1.07
USP3-206ENST00000558157 KAAG1Q9UBP8 84 aa8.4□□□□□ -1.07
USP3-206ENST00000558157 TRAV8-2A0A0B4J237 113 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 M0R3E3 92 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 NDUFB3O43676 98 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 IGKV1-17P01599 117 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 C10orf126Q8N4M7 172 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 TIMD4Q96H15 378 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 MDFICQ9P1T7 246 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 AKAP6Q13023 2319 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 I3L2K1 104 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 SLC25A20O43772 301 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 SCGB1D4Q6XE38 83 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 NRGNQ92686 78 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 KIR2DL4Q99706 377 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 ASCL2Q99929 193 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 YAE1D1Q9NRH1 226 aa8.39□□□□□ -1.07
USP3-206ENST00000558157 USP9YO00507 2555 aaPredicted RBP8.38□□□□□ -1.07
USP3-206ENST00000558157 CRYBG3Q68DQ2 2970 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 TRAV4A0A0B4J268 109 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 ZNF815PA8K554 130 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 IGHV4-39P01824 125 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 HLA-DMBP28068 263 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 ORMDL2Q53FV1 153 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 PSMG3-AS1Q96PY0 264 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 PRADC1Q9BSG0 188 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms