RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 GNRH2O43555 120 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 APOMO95445 188 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 RAB9AP51151 201 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 TMEM170BQ5T4T1 132 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 HIST2H2BDQ6DRA6 164 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 UNQ9165/PRO28630Q6UXU0 137 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 NPFFR1Q9GZQ6 430 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 MRPL35Q9NZE8 188 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 TRAV12-2A0A075B6T6 113 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 A0A0G2JLM5 398 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 OR11H12B2RN74 326 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 BUB3O43684 328 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 COX8AP10176 69 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 PSMG4Q5JS54 123 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 NPBQ8NG41 125 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 OR11H1Q8NG94 326 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 OR11H2Q8NH07 326 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 RHPN1-AS1Q9BWJ2 59 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 MOB4Q9Y3A3 225 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 IGHV4-61A0A0C4DH41 118 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SMIM13P0DJ93 91 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SRSF8Q9BRL6 282 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 NXT2Q9NPJ8 142 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SMAD5-AS1Q9Y6J3 95 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SMAD7O15105 426 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 ANKRD17O75179 2603 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 DPM2O94777 84 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 CYSLTR1Q9Y271 337 aa9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SPENQ96T58 3664 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 PRRC2AP48634 2157 aaKnown RBP9.39□□□□□ -0.91
CCDC88C-211ENST00000556726 SCGB1C2P0DMR2 95 aa9.38□□□□□ -0.91
CCDC88C-211ENST00000556726 CENPVL3A0A0U1RRI6 287 aa9.38□□□□□ -0.91
CCDC88C-211ENST00000556726 SFTPCP11686 197 aa9.38□□□□□ -0.91
CCDC88C-211ENST00000556726 TAX1BP3O14907 124 aa9.38□□□□□ -0.91
CCDC88C-211ENST00000556726 SCRT2Q9NQ03 307 aa9.38□□□□□ -0.91
CCDC88C-211ENST00000556726 LAGE3Q14657 143 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 ANXA2RQ3ZCQ2 193 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 LINC01545Q5VT33 79 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 LY6G5BQ8NDX9 201 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 RPL39LQ96EH5 51 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 FLNCQ14315 2725 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 PPBPP02775 128 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 Q1RN00 199 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 GAGE1Q13065 139 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 OR1N2Q8NGR9 330 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 CCDC140Q96MF4 163 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 CST9LQ9H4G1 147 aa9.37□□□□□ -0.91
CCDC88C-211ENST00000556726 TRAV21A0A0B4J279 112 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 OOSP1A8MZH6 123 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 NPIPB6E9PJ23 425 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 CD5LO43866 347 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 ATP5LO75964 103 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 IGHV4-39P01824 125 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 SRSF1Q07955 248 aaKnown RBP eCLIP9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 SAP30O75446 220 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 COTL1Q14019 142 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 KLK9Q9UKQ9 250 aa9.36□□□□□ -0.91
CCDC88C-211ENST00000556726 COL27A1Q8IZC6 1860 aaPredicted RBP9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 TRBV7-1A0A0A6YYK4 115 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 IGKV3D-20A0A0C4DH25 116 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 HSD52Q0P140 79 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 DPF1Q92782 380 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 DCHS2Q6V1P9 2916 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 AMTNQ6UX39 209 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 MRPL52Q86TS9 123 aaKnown RBP9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 CHAC1Q9BUX1 264 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 CSTL1Q9H114 145 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 ODF3BA8MYP8 253 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 SAMD5Q5TGI4 173 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 DUX3Q96PT4 197 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 JPT2Q9H910 190 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 C11orf21Q9P2W6 132 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 AGRNO00468 2067 aa9.35□□□□□ -0.91
CCDC88C-211ENST00000556726 IGHV1-69DA0A0B4J2H0 117 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 A0A1W2PRX2 142 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 KNCNA6PVL3 124 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 F8W735 103 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 IGHV1-69P01742 117 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 ID1P41134 155 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 DEFB125Q8N687 156 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 SIRPDQ9H106 197 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 DOPEY1Q5JWR5 2465 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 PRSS2P07478 247 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 SYNJ2BPP57105 145 aa9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 ZNF418Q8TF45 676 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 BEX4Q9NWD9 120 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 CHTOPQ9Y3Y2 248 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-211ENST00000556726 IGHV4-30-2A0A087WSY4 118 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 SPINK13Q1W4C9 94 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 Q6ZS46 218 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 SEC11AP67812 179 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 LGALS9BQ3B8N2 356 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 LGALS9CQ6DKI2 356 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 IGKV2D-26A0A0A0MRZ7 120 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 LMO4P61968 165 aa9.33□□□□□ -0.92
CCDC88C-211ENST00000556726 PRB1P04280 392 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 OCIAD2Q56VL3 154 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 C9orf139Q6ZV77 190 aa9.32□□□□□ -0.92
CCDC88C-211ENST00000556726 KIR2DL4Q99706 377 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms