RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ICOSQ9Y6W8 199 aa6.44□□□□□ -1.38
SYNE2-220ENST00000555612 ZC2HC1AQ96GY0 325 aa6.44□□□□□ -1.38
SYNE2-220ENST00000555612 PYGO2Q9BRQ0 406 aa6.44□□□□□ -1.38
SYNE2-220ENST00000555612 TEX48A0A1B0GUV7 120 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 SYS1-DBNDD2H3BUS1 97 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 SPRY2O43597 315 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 GYPEP15421 78 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 Q6ZSR3 168 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 MEGF9Q9H1U4 602 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 TP53BP1Q12888 1972 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-220ENST00000555612 MALRD1Q5VYJ5 2156 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 C5orf56Q8N8D9 126 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 C3orf79P0CE67 100 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 MRPL51Q4U2R6 128 aaKnown RBP6.43□□□□□ -1.38
SYNE2-220ENST00000555612 ZNF843Q8N446 348 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 NPBQ8NG41 125 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 RNF138Q8WVD3 245 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 KLK5Q9Y337 293 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-220ENST00000555612 GTF3C1Q12789 2109 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 TRAV25A0A0B4J276 109 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 IGLV3-1P01715 115 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 AGPAT4-IT1Q9H0P7 198 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 NLRC5Q86WI3 1866 aa6.43□□□□□ -1.38
SYNE2-220ENST00000555612 RPL18AQ02543 176 aaKnown RBP6.42□□□□□ -1.38
SYNE2-220ENST00000555612 C2orf82Q6UX34 121 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 C16orf74Q96GX8 76 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 MRPL23Q16540 153 aaKnown RBP6.42□□□□□ -1.38
SYNE2-220ENST00000555612 FXYD5Q96DB9 178 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 OVOL2Q9BRP0 275 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 FGF23Q9GZV9 251 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-220ENST00000555612 HELZP42694 1942 aaKnown RBP6.42□□□□□ -1.38
SYNE2-220ENST00000555612 PTPRDP23468 1912 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 TAL2Q16559 108 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 A0A087X0K7 114 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 POU2AF1Q16633 256 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 STPG4Q8N801 248 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 Q8N9W7 124 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 ACACBO00763 2458 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 IGLV10-54A0A075B6I4 117 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 CRLF1O75462 422 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 PRO3102Q9H379 93 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 SCRT2Q9NQ03 307 aa6.42□□□□□ -1.38
SYNE2-220ENST00000555612 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-220ENST00000555612 IGKV2-29A2NJV5 120 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-220ENST00000555612 SPINK8P0C7L1 97 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 WIPF3A6NGB9 483 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 PYY3Q5JQD4 70 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 ADAMTSL5Q6ZMM2 481 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 DNAJC30Q96LL9 226 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 ZNF48Q96MX3 618 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-220ENST00000555612 PLXND1Q9Y4D7 1925 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 PLXNA2O75051 1894 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 FAM231BA6NCW3 169 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 CT83Q5H943 113 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 Q8N7P7 452 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 C2orf70A6NJV1 201 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 IGLL5B9A064 214 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 LOXL1Q08397 574 aaPredicted RBP6.41□□□□□ -1.38
SYNE2-220ENST00000555612 CFHR4Q92496 578 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 OTOGLQ3ZCN5 2332 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 FBXL19-AS1Q494R0 122 aa6.41□□□□□ -1.38
SYNE2-220ENST00000555612 NUP210Q8TEM1 1887 aaPredicted RBP6.4□□□□□ -1.38
SYNE2-220ENST00000555612 ZNF726P1Q15940 193 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 SUMO4Q6EEV6 95 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 HIVEP2P31629 2446 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 Q8NFD4 153 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 ATP6V0E2Q8NHE4 81 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 C4orf3Q8WVX3 66 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 NDUFA12Q9UI09 145 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 GAGE2AQ6NT46 116 aa6.4□□□□□ -1.38
SYNE2-220ENST00000555612 LRRC75A-AS1Q8N1F1 130 aa6.4□□□□□ -1.39
SYNE2-220ENST00000555612 HERVK_113P63121 156 aa6.4□□□□□ -1.39
SYNE2-220ENST00000555612 SMIM2Q9BVW6 85 aa6.4□□□□□ -1.39
SYNE2-220ENST00000555612 C9JQL5 133 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 NPYP01303 97 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 IGLV11-55A0A075B6I3 123 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 SIRPDQ9H106 197 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 BUB3O43684 328 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 ZNF493Q6ZR52 646 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 CTSGP08311 255 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 ANAPC1Q9H1A4 1944 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 K7EIM0 57 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 C5orf38Q86SI9 138 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 CAMK2N2Q96S95 79 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 I3L2K1 104 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 SIGLEC8Q9NYZ4 499 aa6.39□□□□□ -1.39
SYNE2-220ENST00000555612 K7EQD1 137 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 TIRAPP58753 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 SRSF2Q01130 221 aaKnown RBP6.38□□□□□ -1.39
SYNE2-220ENST00000555612 GAGE2EQ4V326 116 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 GAGE2DQ9UEU5 116 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 IGHV4-31P0DP07 118 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 C18orf32Q8TCD1 76 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 PRR20EP86478 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 PRR20CP86479 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 PRR20DP86480 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 PRR20BP86481 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 PRR20AP86496 221 aa6.38□□□□□ -1.39
SYNE2-220ENST00000555612 CD5LO43866 347 aa6.37□□□□□ -1.39
SYNE2-220ENST00000555612 EGR2P11161 476 aaPredicted RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms